Variant report

Variant	rs11587309
Chromosome Location	chr1:10446596-10446597
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10439520..10442489-chr1:10444058..10446995,2	MCF-7	breast:
2	chr1:10446399..10450088-chr1:10457513..10461303,7	MCF-7	breast:
3	chr1:10446221..10450110-chr1:10457451..10462205,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142657	Chromatin interaction

Extended variants
information (count: 185 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs1002076	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1013952	0.80[EUR][1000 genomes]
rs10492969	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs10492971	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs10492972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs10492973	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1049887	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10864450	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10864453	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11121537	0.85[EUR][1000 genomes]
rs11121539	0.82[EUR][1000 genomes]
rs11121544	0.81[EUR][1000 genomes]
rs11121545	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11121551	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11121552	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs11121555	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11121557	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11121560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11121561	0.93[ASN][1000 genomes]
rs11121563	0.91[ASN][1000 genomes]
rs11121566	0.85[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1138791	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576384	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11576459	0.82[EUR][1000 genomes]
rs11576654	0.89[EUR][1000 genomes]
rs11576866	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11578694	0.87[EUR][1000 genomes]
rs11578788	0.83[EUR][1000 genomes]
rs11579365	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11580789	0.85[EUR][1000 genomes]
rs11582123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs11584023	0.83[EUR][1000 genomes]
rs11585760	0.83[EUR][1000 genomes]
rs11585794	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586842	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11587495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11587854	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118323	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12119477	0.83[EUR][1000 genomes]
rs12120042	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs12120191	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs12122029	0.82[EUR][1000 genomes]
rs12125535	0.81[EUR][1000 genomes]
rs12127604	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs12128374	0.86[ASN][1000 genomes]
rs12130220	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs12130563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12131441	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12132134	0.80[EUR][1000 genomes]
rs12132635	0.84[EUR][1000 genomes]
rs12133617	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12136376	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs12137880	0.92[EUR][1000 genomes]
rs12139981	0.85[EUR][1000 genomes]
rs12141201	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141246	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs12141416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs12402052	0.95[CEU][hapmap]
rs12403443	0.83[CHD][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap]
rs12403465	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12407992	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs12409754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12409933	0.84[EUR][1000 genomes]
rs12722830	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12725210	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12734551	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs12737239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs12738317	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12746471	0.90[ASN][1000 genomes]
rs12751375	0.91[CEU][hapmap]
rs12753426	0.80[EUR][1000 genomes]
rs12755094	0.91[CEU][hapmap]
rs12755363	0.83[EUR][1000 genomes]
rs12757288	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1339458	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs1467653	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1536262	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1536263	0.91[CEU][hapmap]
rs1538557	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs1555849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556916	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17034643	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs17034821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17396382	0.87[CEU][hapmap]
rs17400510	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs17401924	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs17401966	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs17402762	0.83[ASN][1000 genomes]
rs17410217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs17410793	0.83[EUR][1000 genomes]
rs17411502	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs1889309	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs2027330	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2039778	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs2148152	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2182326	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs2185252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2229687	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2236678	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275424	0.87[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap]
rs2276100	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34045426	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34075302	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34636442	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35388505	0.90[EUR][1000 genomes]
rs35716098	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35759975	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35811280	0.96[ASN][1000 genomes]
rs35850116	0.83[EUR][1000 genomes]
rs3737155	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3748575	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3748577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs3748578	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs3748579	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3748581	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs3753037	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs3762286	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762287	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3762288	0.91[ASN][1000 genomes]
rs4240911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4333852	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4348727	0.91[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs4475756	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs4529713	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs4623	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs4845930	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4845931	0.82[EUR][1000 genomes]
rs4845934	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4846197	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs4846198	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs4846199	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4846205	0.85[EUR][1000 genomes]
rs4846207	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4846208	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4846209	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4846210	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4846212	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs4846213	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4846216	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4846218	0.91[ASN][1000 genomes]
rs4846219	0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4846221	0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs58014725	0.90[ASN][1000 genomes]
rs58053556	0.88[EUR][1000 genomes]
rs58697740	0.83[EUR][1000 genomes]
rs60743860	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61326491	0.86[ASN][1000 genomes]
rs61778376	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61778399	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778401	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778402	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778403	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61778404	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6541085	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs6541089	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6541094	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6674843	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6674949	0.97[ASN][1000 genomes]
rs6682868	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs6696056	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6700866	0.91[CEU][hapmap]
rs746881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs7520935	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs7524693	0.82[EUR][1000 genomes]
rs7530167	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7546364	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7546368	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7553228	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs7553935	0.83[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs8019	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs912961	0.89[EUR][1000 genomes]
rs912962	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs912963	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs9332414	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs946501	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs946503	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs946504	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9651117	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1003498	chr1:10445928-10607351	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11587309	APITD1	cis	cerebellum	SCAN
rs11587309	PGD	cis	lymphoblastoid	seeQTL
rs11587309	KIF1B	cis	parietal	SCAN
rs11587309	KIF1B	cis	Thyroid	GTEx
rs11587309	KIF1B	cis	lymphoblastoid	seeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10400600-10447400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:10409800-10447400	Weak transcription	Small Intestine	intestine
3	chr1:10422400-10447200	Weak transcription	Fetal Heart	heart
4	chr1:10425800-10447800	Weak transcription	Psoas Muscle	Psoas
5	chr1:10434400-10447400	Weak transcription	HMEC	breast
6	chr1:10435400-10447800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:10435400-10448000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:10435600-10447400	Weak transcription	Aorta	Aorta
9	chr1:10435600-10447600	Weak transcription	Thymus	Thymus
10	chr1:10435600-10448800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:10435600-10448800	Weak transcription	Gastric	stomach
12	chr1:10435800-10448000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr1:10436800-10448400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr1:10437000-10447800	Weak transcription	Left Ventricle	heart
15	chr1:10437000-10448000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr1:10437400-10447000	Weak transcription	Dnd41	blood
17	chr1:10437400-10447600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:10437600-10447800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr1:10438600-10447000	Weak transcription	Primary B cells from cord blood	blood
20	chr1:10438600-10458200	Weak transcription	Right Atrium	heart
21	chr1:10438800-10447600	Weak transcription	Fetal Kidney	kidney
22	chr1:10438800-10448000	Weak transcription	Spleen	Spleen
23	chr1:10439000-10447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:10439000-10448200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:10439200-10447200	Weak transcription	Fetal Lung	lung
26	chr1:10439200-10447200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:10439200-10447600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr1:10439400-10447000	Weak transcription	Fetal Thymus	thymus
29	chr1:10439400-10447000	Weak transcription	NHEK	skin
30	chr1:10439400-10447400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:10439600-10447000	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:10439600-10447000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:10439600-10447200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr1:10439600-10447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr1:10439600-10447400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:10439600-10447600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr1:10439600-10447800	Weak transcription	Primary T cells from cord blood	blood
38	chr1:10439600-10448000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr1:10439600-10458200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr1:10439800-10446800	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr1:10439800-10447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:10440000-10446800	Weak transcription	Fetal Intestine Small	intestine
43	chr1:10440000-10447000	Weak transcription	Fetal Intestine Large	intestine
44	chr1:10440000-10447400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:10440000-10447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:10440000-10447600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:10440000-10447600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr1:10440000-10447800	Weak transcription	Colonic Mucosa	Colon
49	chr1:10440000-10451800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:10440000-10458400	Weak transcription	Lung	lung

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