Variant report

Variant	rs17401924
Chromosome Location	chr1:10384439-10384440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10382484..10384507-chr1:10403370..10405612,2	K562	blood:
2	chr1:10382347..10384488-chr1:10398364..10401134,2	K562	blood:

Variant related genes	Relation type
ENSG00000054523	Chromatin interaction

Extended variants
information (count: 151 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1002076	0.87[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs10492969	0.83[CHD][hapmap]
rs10492971	0.80[CEU][hapmap]
rs10492972	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs1049887	0.90[EUR][1000 genomes]
rs11121531	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11121532	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11121533	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11121537	0.81[EUR][1000 genomes]
rs11121544	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11121545	0.87[EUR][1000 genomes]
rs11121551	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs11121552	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs11121557	0.83[CHD][hapmap]
rs11121560	0.81[EUR][1000 genomes]
rs11576654	0.91[EUR][1000 genomes]
rs11576866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11578694	0.89[EUR][1000 genomes]
rs11578788	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11579365	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs11580789	0.81[EUR][1000 genomes]
rs11582123	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11585760	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11585794	0.87[CEU][hapmap]
rs11587309	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs11587495	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs11587854	0.81[EUR][1000 genomes]
rs12119477	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12120042	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs12120191	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs12127553	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12127604	0.82[CEU][hapmap]
rs12129035	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12130220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12130563	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12131441	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs12132635	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12136376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12137456	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12137880	0.88[EUR][1000 genomes]
rs12141201	0.81[EUR][1000 genomes]
rs12141246	0.80[CEU][hapmap]
rs12141416	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs12402052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12403443	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12406776	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12407992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12408019	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12409754	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12409933	0.81[AMR][1000 genomes]
rs12722830	0.87[EUR][1000 genomes]
rs12733312	0.95[CEU][hapmap];0.80[JPT][hapmap]
rs12734068	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734551	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737239	0.91[CEU][hapmap]
rs12751375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12755094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12755363	0.85[EUR][1000 genomes]
rs12757288	0.80[CEU][hapmap]
rs12759696	0.81[EUR][1000 genomes]
rs1339458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467653	0.83[CHD][hapmap]
rs1536262	0.83[CHD][hapmap]
rs1536263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538557	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs1555849	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs1556916	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs1556917	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap]
rs17034643	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs17034821	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs17396382	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs17400510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17401966	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17410217	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs17410793	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17411502	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1889309	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2004034	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2039778	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs2182326	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs2185252	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs2275424	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2276100	0.87[EUR][1000 genomes]
rs34215045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34225619	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34636442	0.80[EUR][1000 genomes]
rs35388505	0.84[EUR][1000 genomes]
rs35766535	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35837142	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35850116	0.80[EUR][1000 genomes]
rs3737155	0.91[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs3748577	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs3748578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3748579	0.87[EUR][1000 genomes]
rs3748581	0.83[CHD][hapmap]
rs3753037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4240911	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs4259656	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4333852	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4348727	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs4475756	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4529713	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs4845933	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845934	0.86[EUR][1000 genomes]
rs4846197	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs4846205	0.82[EUR][1000 genomes]
rs4846208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4846209	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap]
rs4846210	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4846212	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4846213	0.87[EUR][1000 genomes]
rs4846216	0.83[CHD][hapmap]
rs4846219	0.83[CHD][hapmap]
rs4846221	0.83[CHD][hapmap]
rs58053556	0.90[EUR][1000 genomes]
rs58549151	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58697740	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60743860	0.91[EUR][1000 genomes]
rs61778376	0.87[EUR][1000 genomes]
rs61778399	0.86[EUR][1000 genomes]
rs61778401	0.86[EUR][1000 genomes]
rs61778403	0.84[EUR][1000 genomes]
rs61778404	0.81[EUR][1000 genomes]
rs6541085	0.83[CHD][hapmap]
rs6541089	0.83[CEU][hapmap]
rs6674843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs6682868	0.83[CHD][hapmap]
rs6700866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs746881	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7520651	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7520935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7530167	0.91[EUR][1000 genomes]
rs7546368	0.83[CHD][hapmap]
rs7553228	0.80[CEU][hapmap]
rs7553935	0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs8019	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap]
rs912961	0.85[EUR][1000 genomes]
rs912962	0.83[CHD][hapmap]
rs912963	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs9332414	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs946501	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs946503	0.80[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs946504	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv545381	chr1:10296452-10423988	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv437200	chr1:10366487-10387704	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv437201	chr1:10370312-10387704	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17401924	KIF1B	cis	parietal	SCAN
rs17401924	PGD	cis	lymphoblastoid	seeQTL
rs17401924	KIF1B	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10357400-10385600	Weak transcription	Small Intestine	intestine
2	chr1:10357600-10397000	Weak transcription	Fetal Thymus	thymus
3	chr1:10358800-10407000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:10364200-10394600	Weak transcription	Dnd41	blood
5	chr1:10364400-10384800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:10364600-10431000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:10364800-10386000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:10364800-10386000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:10364800-10386000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:10364800-10386000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:10364800-10386000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr1:10365000-10385800	Weak transcription	NHEK	skin
13	chr1:10365200-10398400	Weak transcription	Fetal Heart	heart
14	chr1:10365600-10385600	Weak transcription	Hela-S3	cervix
15	chr1:10365800-10394800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:10366800-10385800	Weak transcription	Fetal Brain Male	brain
17	chr1:10368400-10385800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:10370200-10393800	Weak transcription	Right Atrium	heart
19	chr1:10373200-10385600	Weak transcription	Fetal Lung	lung
20	chr1:10378200-10397200	Weak transcription	GM12878-XiMat	blood
21	chr1:10378800-10385800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:10378800-10388200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr1:10378800-10395200	Weak transcription	Thymus	Thymus
24	chr1:10379400-10397200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:10379600-10385400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:10379800-10387200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr1:10379800-10399400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:10380000-10385600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:10380000-10388800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr1:10380200-10399800	Weak transcription	Stomach Mucosa	stomach
31	chr1:10380200-10404800	Weak transcription	Psoas Muscle	Psoas
32	chr1:10380400-10386400	Weak transcription	Fetal Kidney	kidney
33	chr1:10380400-10386800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:10380400-10399600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:10380400-10436600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:10380600-10394400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:10380600-10401000	Weak transcription	A549	lung
38	chr1:10380600-10426400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:10380800-10394200	Weak transcription	K562	blood
40	chr1:10381000-10384800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr1:10381000-10389800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:10381000-10436400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:10381400-10385200	Strong transcription	Brain Cingulate Gyrus	brain
44	chr1:10381600-10384800	Strong transcription	Brain Angular Gyrus	brain
45	chr1:10381600-10386600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:10381600-10386800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:10381600-10387200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr1:10381600-10388000	Strong transcription	Brain Hippocampus Middle	brain
49	chr1:10381600-10388200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:10381600-10388600	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links