Variant report

Variant	rs4846216
Chromosome Location	chr1:10447792-10447793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:10447338-10449101	A549	lung:	n/a	n/a
2	NR3C1	chr1:10447492-10448076	A549	lung:	n/a	chr1:10448002-10448020
3	JUND	chr1:10447620-10448026	A549	lung:	n/a	n/a
4	POLR2A	chr1:10447661-10448001	Hela-S3	cervix:	n/a	n/a
5	SIX5	chr1:10447379-10448955	A549	lung:	n/a	chr1:10448072-10448081
6	IRF3	chr1:10447752-10447837	GM12878	blood:	n/a	n/a
7	TEAD4	chr1:10447533-10447982	A549	lung:	n/a	n/a
8	ELF1	chr1:10447607-10448099	A549	lung:	n/a	n/a
9	POLR2A	chr1:10447610-10448455	U87	brain:	n/a	n/a
10	EP300	chr1:10447300-10448991	A549	lung:	n/a	n/a
11	STAT3	chr1:10447700-10448263	MCF10A-Er-Src	breast:	n/a	chr1:10448134-10448145
12	FOXA1	chr1:10447678-10447944	T-47D	breast:	n/a	n/a
13	CTCF	chr1:10447760-10447910	HFF	foreskin:	n/a	n/a
14	REST	chr1:10447347-10449071	A549	lung:	n/a	n/a
15	CEBPB	chr1:10447518-10448823	A549	lung:	n/a	chr1:10448206-10448219
16	STAT3	chr1:10447699-10447899	MCF10A-Er-Src	breast:	n/a	n/a
17	MAFK	chr1:10447755-10448445	H1-hESC	embryonic stem cell:	n/a	chr1:10448265-10448280 chr1:10448266-10448276 chr1:10448270-10448281 chr1:10448267-10448276 chr1:10448270-10448281 chr1:10448269-10448280
18	POLR2A	chr1:10447510-10448556	SK-N-MC	brain:	n/a	n/a
19	RAD21	chr1:10447562-10447942	A549	lung:	n/a	n/a
20	MAX	chr1:10447072-10449043	A549	lung:	n/a	n/a
21	NR3C1	chr1:10447602-10448011	A549	lung:	n/a	n/a
22	BCL3	chr1:10447442-10448785	A549	lung:	n/a	n/a
23	CEBPB	chr1:10447456-10448910	A549	lung:	n/a	chr1:10448206-10448219
24	GATA3	chr1:10447311-10448926	A549	lung:	n/a	n/a
25	SP1	chr1:10447356-10448907	A549	lung:	n/a	n/a
26	FOSL2	chr1:10447427-10448811	A549	lung:	n/a	chr1:10448264-10448276
27	TBP	chr1:10447643-10448499	Hela-S3	cervix:	n/a	n/a
28	ZBTB33	chr1:10447519-10447982	A549	lung:	n/a	n/a
29	NR3C1	chr1:10447657-10447958	A549	lung:	n/a	n/a
30	NR3C1	chr1:10447505-10448868	A549	lung:	n/a	chr1:10448463-10448489 chr1:10448463-10448489 chr1:10448469-10448483 chr1:10448002-10448020 chr1:10448469-10448483 chr1:10448465-10448486 chr1:10448467-10448484
31	FOXA2	chr1:10447523-10448175	A549	lung:	n/a	n/a
32	POLR2A	chr1:10447761-10448467	SK-N-SH	brain:	n/a	n/a
33	BCL3	chr1:10447376-10448884	A549	lung:	n/a	n/a
34	TEAD4	chr1:10447560-10448002	A549	lung:	n/a	n/a
35	NR3C1	chr1:10447529-10448054	A549	lung:	n/a	chr1:10448002-10448020
36	ETS1	chr1:10447498-10448009	A549	lung:	n/a	n/a
37	CEBPB	chr1:10447730-10448572	K562	blood:	n/a	chr1:10448206-10448219
38	MAFK	chr1:10447773-10448550	K562	blood:	n/a	chr1:10448265-10448280 chr1:10448266-10448276 chr1:10448270-10448281 chr1:10448267-10448276 chr1:10448270-10448281 chr1:10448269-10448280
39	FOXA1	chr1:10447629-10447887	T-47D	breast:	n/a	n/a
40	ATF3	chr1:10447483-10448765	A549	lung:	n/a	n/a
41	CREB1	chr1:10447628-10447943	A549	lung:	n/a	n/a
42	FOXA2	chr1:10447484-10448451	A549	lung:	n/a	n/a
43	REST	chr1:10447559-10448272	A549	lung:	n/a	n/a
44	CEBPB	chr1:10447525-10448041	MCF-7	breast:	n/a	n/a
45	POLR2A	chr1:10447573-10448473	SK-N-MC	brain:	n/a	n/a
46	CEBPB	chr1:10447606-10447950	MCF-7	breast:	n/a	n/a
47	POLR2A	chr1:10447709-10447879	MCF10A-Er-Src	breast:	n/a	n/a
48	TCF12	chr1:10447561-10448746	A549	lung:	n/a	n/a
49	NR3C1	chr1:10447523-10448064	A549	lung:	n/a	chr1:10448002-10448020
50	JUND	chr1:10447538-10447974	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:10447111..10452516-chr1:10455817..10460024,9	K562	blood:
2	chr1:10446950..10451985-chr1:10457311..10462205,6	K562	blood:
3	chr1:10440159..10442885-chr1:10447718..10449584,2	MCF-7	breast:
4	chr1:10446399..10450088-chr1:10457513..10461303,7	MCF-7	breast:
5	chr1:10447080..10448885-chr1:10454434..10456655,2	MCF-7	breast:
6	chr1:10446221..10450110-chr1:10457451..10462205,13	MCF-7	breast:

Variant related genes	Relation type
RN7SL721P	TF binding region
ENSG00000142657	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs1002076	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10492969	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap]
rs10492971	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10492972	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10492973	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10864450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10864453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11121541	0.90[EUR][1000 genomes]
rs11121543	0.94[YRI][hapmap]
rs11121545	0.83[ASN][1000 genomes]
rs11121551	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11121552	0.83[CHD][hapmap]
rs11121555	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11121557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11121560	0.90[ASN][1000 genomes]
rs11121561	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11121563	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11121566	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1138791	0.97[ASN][1000 genomes]
rs11576384	0.88[ASN][1000 genomes]
rs11579365	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11582123	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11585794	0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs11586842	0.94[ASN][1000 genomes]
rs11587309	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11587495	0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs11587854	0.97[ASN][1000 genomes]
rs12064209	0.94[YRI][hapmap]
rs12069853	0.94[YRI][hapmap]
rs12118323	0.90[ASN][1000 genomes]
rs12120042	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12120191	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12127604	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12128374	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12130220	0.83[CHD][hapmap]
rs12130563	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12131441	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12133617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136376	0.83[CHD][hapmap]
rs12136404	0.83[EUR][1000 genomes]
rs12141201	0.97[ASN][1000 genomes]
rs12141246	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12141416	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12402723	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12403443	0.83[CHD][hapmap]
rs12403465	0.83[ASN][1000 genomes]
rs12407992	0.83[CHD][hapmap]
rs12409754	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs12725210	0.83[ASN][1000 genomes]
rs12734551	0.83[CHD][hapmap]
rs12737239	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12738317	0.84[ASN][1000 genomes]
rs12746471	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12757288	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1339458	0.83[CHD][hapmap]
rs1467653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1536262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538557	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1555849	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1556916	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1556917	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17034643	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17034821	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17396973	0.83[EUR][1000 genomes]
rs17400510	0.83[CHD][hapmap]
rs17401924	0.83[CHD][hapmap]
rs17401966	0.83[CHD][hapmap]
rs17402762	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17410217	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17411502	0.83[CHD][hapmap]
rs1889309	0.83[CHD][hapmap]
rs2027330	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2039778	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2148152	0.86[ASN][1000 genomes]
rs2182326	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2185252	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2229687	0.90[ASN][1000 genomes]
rs2236678	0.90[ASN][1000 genomes]
rs2275424	0.81[CHD][hapmap]
rs34045426	0.88[ASN][1000 genomes]
rs34075302	0.84[ASN][1000 genomes]
rs34636442	0.84[ASN][1000 genomes]
rs35716098	0.90[ASN][1000 genomes]
rs35759975	0.90[ASN][1000 genomes]
rs35811280	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737155	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3748575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3748577	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3748578	0.83[CHD][hapmap]
rs3748579	0.84[ASN][1000 genomes]
rs3748581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3753037	0.83[CHD][hapmap]
rs3762286	0.90[ASN][1000 genomes]
rs3762287	0.88[ASN][1000 genomes]
rs3762288	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4240911	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4333852	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4348727	0.81[CHD][hapmap]
rs4475756	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4529713	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4623	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4845930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4846197	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4846198	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs4846199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4846207	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4846208	0.83[CHD][hapmap]
rs4846209	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4846210	0.83[CHD][hapmap]
rs4846212	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4846218	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846219	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846221	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58014725	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61326491	0.84[ASN][1000 genomes]
rs61778399	0.86[ASN][1000 genomes]
rs61778401	0.86[ASN][1000 genomes]
rs61778402	0.86[ASN][1000 genomes]
rs61778403	0.83[ASN][1000 genomes]
rs61778404	0.93[ASN][1000 genomes]
rs6541085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs6541089	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6541090	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6541094	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6674843	0.83[CHD][hapmap]
rs6674949	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696056	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6703708	0.94[YRI][hapmap]
rs7368073	0.82[EUR][1000 genomes]
rs746881	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7520935	0.83[CHD][hapmap]
rs7546364	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7546368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7553228	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7553935	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8019	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs912962	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs912963	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9332414	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs946501	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs946503	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs946504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs9651117	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1003498	chr1:10445928-10607351	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs4846216	PGD	cis	lymphoblastoid	seeQTL
rs4846216	MTOR	cis	parietal	SCAN
rs4846216	KIF1B	cis	multi-tissue	Pritchard
rs4846216	PGD	cis	multi-tissue	Pritchard
rs4846216	KIF1B	cis	brain	seeQTL
rs4846216	PLEKHG5	cis	parietal	SCAN
rs4846216	PGD	cis	parietal	SCAN
rs4846216	PGD	cis	Muscle Skeletal	GTEx
rs4846216	APITD1	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10425800-10447800	Weak transcription	Psoas Muscle	Psoas
2	chr1:10435400-10447800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr1:10435400-10448000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:10435600-10448800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:10435600-10448800	Weak transcription	Gastric	stomach
6	chr1:10435800-10448000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:10436800-10448400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:10437000-10447800	Weak transcription	Left Ventricle	heart
9	chr1:10437000-10448000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:10437600-10447800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:10438600-10458200	Weak transcription	Right Atrium	heart
12	chr1:10438800-10448000	Weak transcription	Spleen	Spleen
13	chr1:10439000-10448200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:10439600-10447800	Weak transcription	Primary T cells from cord blood	blood
15	chr1:10439600-10448000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr1:10439600-10458200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:10440000-10447800	Weak transcription	Colonic Mucosa	Colon
18	chr1:10440000-10451800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:10440000-10458400	Weak transcription	Lung	lung
20	chr1:10440400-10447800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr1:10444800-10448800	Weak transcription	Pancreas	Pancrea
22	chr1:10444800-10458200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:10445200-10448200	Enhancers	HepG2	liver
24	chr1:10445600-10454000	Weak transcription	Fetal Brain Female	brain
25	chr1:10446000-10448600	Weak transcription	Brain Germinal Matrix	brain
26	chr1:10446400-10448400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:10446400-10449600	Enhancers	Placenta	Placenta
28	chr1:10446400-10450400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr1:10446600-10447800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:10446600-10447800	Enhancers	A549	lung
31	chr1:10446800-10447800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:10446800-10448000	Enhancers	Adipose Nuclei	Adipose
33	chr1:10446800-10449800	Enhancers	Fetal Intestine Small	intestine
34	chr1:10447000-10447800	Enhancers	Primary B cells from cord blood	blood
35	chr1:10447000-10447800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:10447000-10447800	Enhancers	Brain Hippocampus Middle	brain
37	chr1:10447000-10448200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr1:10447000-10448600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:10447000-10448600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:10447000-10448600	Enhancers	Fetal Stomach	stomach
41	chr1:10447000-10448800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:10447000-10448800	Weak transcription	Esophagus	oesophagus
43	chr1:10447000-10449000	Enhancers	Liver	Liver
44	chr1:10447000-10449000	Enhancers	Colon Smooth Muscle	Colon
45	chr1:10447000-10449000	Enhancers	Fetal Intestine Large	intestine
46	chr1:10447000-10449000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr1:10447000-10449200	Enhancers	Fetal Muscle Leg	muscle
48	chr1:10447000-10449600	Enhancers	Stomach Mucosa	stomach
49	chr1:10447000-10450000	Enhancers	Fetal Thymus	thymus
50	chr1:10447200-10447800	Enhancers	Skeletal Muscle Male	skeletal muscle

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