The 2.0 version of rSNPBase

Variant report

Variant rs11121563
Chromosome Location chr1:10462875-10462876
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10459600-10465000 Transcr. at gene 5' and 3' A549 lung
2 chr1:10460000-10463800 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:10460000-10490200 Weak transcription Psoas Muscle Psoas
4 chr1:10460200-10475400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:10460400-10463000 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:10460400-10463600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:10460400-10463800 Weak transcription Gastric stomach
8 chr1:10460400-10464200 Weak transcription Pancreas Pancrea
9 chr1:10460400-10464200 Weak transcription Spleen Spleen
10 chr1:10460400-10464800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:10460400-10472800 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:10460400-10475200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:10460600-10463000 Weak transcription Primary B cells from peripheral blood blood
14 chr1:10460600-10463000 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr1:10460600-10463000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr1:10460600-10463000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:10460600-10463000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:10460600-10463000 Weak transcription Fetal Kidney kidney
19 chr1:10460600-10463000 Weak transcription Left Ventricle heart
20 chr1:10460600-10463000 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:10460600-10463200 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:10460600-10463400 Weak transcription Colon Smooth Muscle Colon
23 chr1:10460600-10463600 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr1:10460600-10463800 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr1:10460600-10464000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:10460600-10464200 Weak transcription Small Intestine intestine
27 chr1:10460600-10481200 Strong transcription H1 Cell Line embryonic stem cell
28 chr1:10460800-10463000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:10460800-10463200 Weak transcription Brain Substantia Nigra brain
30 chr1:10460800-10464200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr1:10460800-10468800 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:10460800-10480400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr1:10460800-10482000 Strong transcription HUES48 Cell Line embryonic stem cell
34 chr1:10460800-10482400 Strong transcription Fetal Stomach stomach
35 chr1:10460800-10483400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:10461000-10463000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:10461000-10463000 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:10461000-10463000 Weak transcription Fetal Thymus thymus
39 chr1:10461000-10463000 Weak transcription Stomach Smooth Muscle stomach
40 chr1:10461000-10464200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:10461000-10464600 Genic enhancers HUVEC blood vessel
42 chr1:10461000-10474600 Strong transcription HUES6 Cell Line embryonic stem cell
43 chr1:10461000-10475200 Strong transcription HUES64 Cell Line embryonic stem cell
44 chr1:10461000-10476800 Weak transcription Fetal Heart heart
45 chr1:10461000-10482000 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr1:10461200-10463200 Weak transcription Colonic Mucosa Colon
47 chr1:10461200-10463600 Weak transcription Fetal Brain Male brain
48 chr1:10461200-10464200 Genic enhancers Hela-S3 cervix
49 chr1:10461200-10464400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr1:10461200-10464400 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015