Variant report

Variant	rs11121551
Chromosome Location	chr1:10435170-10435171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 185 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1002076	0.93[ASW][hapmap];0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1013952	0.85[EUR][1000 genomes]
rs1013953	0.83[EUR][1000 genomes]
rs10492969	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10492971	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[EUR][1000 genomes]
rs10492972	0.80[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10492973	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1049887	0.81[EUR][1000 genomes]
rs1065828	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10864449	0.81[EUR][1000 genomes]
rs10864450	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10864453	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11121535	0.80[EUR][1000 genomes]
rs11121537	0.81[AMR][1000 genomes]
rs11121539	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11121545	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11121552	0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs11121555	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11121557	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11121560	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11121561	0.92[ASN][1000 genomes]
rs11121563	0.90[ASN][1000 genomes]
rs11121566	0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1138791	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11576384	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11576459	0.86[EUR][1000 genomes]
rs11576654	0.81[EUR][1000 genomes]
rs11579365	0.81[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11580789	0.80[AFR][1000 genomes]
rs11580854	0.81[EUR][1000 genomes]
rs11582123	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11585794	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11586842	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11587309	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11587495	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11587854	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12117635	0.81[EUR][1000 genomes]
rs12118323	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12120042	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12120191	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12122029	0.86[EUR][1000 genomes]
rs12125535	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12127604	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12128374	0.85[ASN][1000 genomes]
rs12130220	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs12130563	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12131441	0.93[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12132134	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133617	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12136376	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs12137880	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12139981	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12141201	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12141246	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12141416	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs12402052	0.83[CEU][hapmap]
rs12403443	0.83[CHD][hapmap];0.92[GIH][hapmap]
rs12403465	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12406943	0.83[EUR][1000 genomes]
rs12407992	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs12409137	0.83[EUR][1000 genomes]
rs12409754	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12409933	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12722830	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12725210	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12734551	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs12737239	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs12738317	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12746471	0.89[ASN][1000 genomes]
rs12751375	0.80[CEU][hapmap]
rs12753426	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12755094	0.80[CEU][hapmap]
rs12757288	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[EUR][1000 genomes]
rs1339458	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs1467653	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1536262	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1536263	0.80[CEU][hapmap]
rs1538557	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs1555849	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556915	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs1556916	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1556917	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17034643	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes]
rs17034775	0.80[ASW][hapmap]
rs17034821	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17400510	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs17401924	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs17401966	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs17402762	0.82[ASN][1000 genomes]
rs17410217	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes]
rs17411502	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs1889309	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]
rs2027330	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2039778	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2148152	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2182326	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2185252	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2229687	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2236678	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275424	0.81[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs2276100	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34045426	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34075302	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34565762	0.81[EUR][1000 genomes]
rs34636442	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35388505	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35716098	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35759975	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35811280	0.95[ASN][1000 genomes]
rs3737155	0.93[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3748575	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3748577	0.80[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3748578	0.80[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap]
rs3748579	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3748581	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3753037	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs3762286	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3762287	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3762288	0.90[ASN][1000 genomes]
rs4240911	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap]
rs4333852	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4348727	0.80[CEU][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap]
rs4475756	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4529713	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs4623	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4845930	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4845931	0.87[EUR][1000 genomes]
rs4845932	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4846197	0.86[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs4846198	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4846199	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4846206	0.83[EUR][1000 genomes]
rs4846207	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs4846208	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs4846209	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4846210	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs4846212	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4846213	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4846216	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4846218	0.90[ASN][1000 genomes]
rs4846219	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4846221	0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs58014725	0.89[ASN][1000 genomes]
rs58053556	0.80[EUR][1000 genomes]
rs60743860	0.81[EUR][1000 genomes]
rs61326491	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61775887	0.81[EUR][1000 genomes]
rs61778376	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61778399	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778401	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778402	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61778403	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61778404	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6541085	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6541089	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6541094	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6661326	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs6674843	0.83[CHD][hapmap];0.95[GIH][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs6674949	0.96[ASN][1000 genomes]
rs6682868	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6696056	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7418410	0.81[CEU][hapmap]
rs746881	0.80[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7520935	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs7524693	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7530167	0.81[EUR][1000 genomes]
rs7546364	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7546368	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7553228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7553935	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8019	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs912961	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs912962	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs912963	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs9332414	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs946501	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs946502	0.83[EUR][1000 genomes]
rs946503	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs946504	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9651117	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11121551	PGD	cis	lymphoblastoid	seeQTL
rs11121551	PLEKHG5	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10380400-10436600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:10381000-10436400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:10385200-10436400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:10393800-10444600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:10394200-10441800	Strong transcription	Liver	Liver
6	chr1:10398000-10438000	Weak transcription	GM12878-XiMat	blood
7	chr1:10400200-10438200	Weak transcription	Stomach Mucosa	stomach
8	chr1:10400600-10446400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:10400600-10447400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:10402600-10437200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:10409800-10447400	Weak transcription	Small Intestine	intestine
12	chr1:10418400-10445600	Strong transcription	Fetal Brain Female	brain
13	chr1:10419200-10437800	Weak transcription	Right Atrium	heart
14	chr1:10419200-10442800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:10419800-10441200	Strong transcription	Fetal Stomach	stomach
16	chr1:10420000-10440000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:10420200-10445000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:10420200-10446000	Strong transcription	Brain Germinal Matrix	brain
19	chr1:10420800-10437400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr1:10421000-10440000	Strong transcription	Fetal Intestine Small	intestine
21	chr1:10421000-10440200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr1:10422400-10447200	Weak transcription	Fetal Heart	heart
23	chr1:10422600-10440600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr1:10425000-10436800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:10425000-10438000	Strong transcription	Adipose Nuclei	Adipose
26	chr1:10425000-10438200	Strong transcription	Fetal Muscle Leg	muscle
27	chr1:10425200-10435600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:10425200-10437000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:10425200-10437200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:10425200-10438000	Strong transcription	Brain Anterior Caudate	brain
31	chr1:10425200-10441600	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:10425200-10441800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:10425800-10447800	Weak transcription	Psoas Muscle	Psoas
34	chr1:10426000-10437000	Weak transcription	Hela-S3	cervix
35	chr1:10426000-10438200	Weak transcription	Fetal Thymus	thymus
36	chr1:10426600-10438200	Weak transcription	NHLF	lung
37	chr1:10427800-10437400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr1:10427800-10439800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr1:10427800-10441800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:10428200-10437200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr1:10428200-10440000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr1:10428400-10442000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:10429400-10435600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:10430400-10437600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr1:10430400-10443800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:10430800-10437000	Strong transcription	Left Ventricle	heart
47	chr1:10430800-10438000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:10431000-10437400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:10431200-10435600	Strong transcription	Osteobl	bone
50	chr1:10431200-10436800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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