Variant report

Variant	rs12407992
Chromosome Location	chr1:10311983-10311984
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1002076	0.87[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap]
rs1013952	0.82[EUR][1000 genomes]
rs10492969	0.83[CHD][hapmap]
rs10492971	0.80[CEU][hapmap]
rs10492972	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs1049887	0.85[EUR][1000 genomes]
rs11121528	0.81[ASN][1000 genomes]
rs11121531	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11121532	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11121533	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11121537	0.82[EUR][1000 genomes]
rs11121544	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11121545	0.82[EUR][1000 genomes]
rs11121551	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs11121552	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs11121557	0.83[CHD][hapmap]
rs11576654	0.86[EUR][1000 genomes]
rs11576866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11578694	0.84[EUR][1000 genomes]
rs11578788	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11579365	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs11580789	0.83[EUR][1000 genomes]
rs11582123	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11584023	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11585760	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11585794	0.87[CEU][hapmap]
rs11587309	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs11587495	0.91[CEU][hapmap]
rs12117765	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12119477	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12120042	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs12120191	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs12127553	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127604	0.82[CEU][hapmap]
rs12129035	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12130220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12130563	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12131441	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12132635	0.92[EUR][1000 genomes]
rs12133125	0.85[ASN][1000 genomes]
rs12136376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137456	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137880	0.83[EUR][1000 genomes]
rs12141246	0.80[CEU][hapmap]
rs12141416	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs12402052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403443	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12406776	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12406943	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12408019	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12409137	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12409754	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs12722830	0.82[EUR][1000 genomes]
rs12733312	0.95[CEU][hapmap];0.80[JPT][hapmap]
rs12734068	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12734551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12737239	0.91[CEU][hapmap]
rs12751375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12755094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12757288	0.80[CEU][hapmap]
rs12757820	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1339458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1467653	0.83[CHD][hapmap]
rs1536262	0.83[CHD][hapmap]
rs1536263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1538557	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs1555849	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs1556916	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs1556917	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs17034643	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs17034821	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs17396382	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs17400510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17401924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17401966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17410217	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs17410793	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17411502	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs1889309	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.80[EUR][1000 genomes]
rs2004034	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2039778	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs2182326	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs2185252	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs2275424	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2276100	0.82[EUR][1000 genomes]
rs34215045	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34225619	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34565762	0.82[AMR][1000 genomes]
rs35111552	0.82[ASN][1000 genomes]
rs35187325	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35766535	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35830240	0.85[ASN][1000 genomes]
rs35837142	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35850116	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3737155	0.91[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs3748577	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs3748578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3748579	0.82[EUR][1000 genomes]
rs3748581	0.83[CHD][hapmap]
rs3753037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4240911	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4259656	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4333852	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs4348727	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4475756	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap]
rs4529713	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4845933	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4845934	0.81[EUR][1000 genomes]
rs4846197	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4846205	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4846206	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846207	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846209	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4846210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4846212	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap]
rs4846213	0.82[EUR][1000 genomes]
rs4846216	0.83[CHD][hapmap]
rs4846219	0.83[CHD][hapmap]
rs4846221	0.83[CHD][hapmap]
rs55676616	0.81[EUR][1000 genomes]
rs58053556	0.85[EUR][1000 genomes]
rs58549151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58697740	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60743860	0.86[EUR][1000 genomes]
rs61778376	0.82[EUR][1000 genomes]
rs61778399	0.81[EUR][1000 genomes]
rs61778401	0.81[EUR][1000 genomes]
rs61784573	0.81[ASN][1000 genomes]
rs61784574	0.81[ASN][1000 genomes]
rs61784579	0.81[ASN][1000 genomes]
rs6541085	0.83[CHD][hapmap]
rs6541089	0.83[CEU][hapmap]
rs6674843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs6682868	0.83[CHD][hapmap]
rs6685895	0.82[AMR][1000 genomes]
rs6696056	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6700866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746881	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs7520259	0.81[ASN][1000 genomes]
rs7520651	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7520935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7530167	0.86[EUR][1000 genomes]
rs7546368	0.83[CHD][hapmap]
rs7553228	0.80[CEU][hapmap]
rs7553935	0.83[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap]
rs8019	0.80[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap]
rs912961	0.86[EUR][1000 genomes]
rs912962	0.83[CHD][hapmap]
rs912963	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap]
rs9332414	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs946501	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs946502	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs946503	0.80[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs946504	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv999251	chr1:10276263-10318163	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv545381	chr1:10296452-10423988	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv545382	chr1:10309026-10377221	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12407992	KIF1B	cis	Thyroid	GTEx
rs12407992	AADACL3	cis	parietal	SCAN
rs12407992	PGD	cis	lymphoblastoid	seeQTL
rs12407992	KIF1B	cis	parietal	SCAN
rs12407992	RNF207	cis	cerebellum	SCAN

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:10277000-10322000	Weak transcription	Spleen	Spleen
3	chr1:10285200-10316000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:10285400-10312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:10287400-10312400	Weak transcription	Pancreas	Pancrea
6	chr1:10289200-10317400	Weak transcription	Liver	Liver
7	chr1:10293000-10322000	Weak transcription	Primary T cells from cord blood	blood
8	chr1:10295600-10312000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:10295600-10316400	Weak transcription	Placenta	Placenta
10	chr1:10295600-10317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:10295800-10322000	Weak transcription	Lung	lung
12	chr1:10296200-10312400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:10296200-10313600	Weak transcription	Fetal Brain Female	brain
14	chr1:10296400-10312400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:10296400-10313200	Weak transcription	Fetal Stomach	stomach
16	chr1:10296400-10316800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:10297200-10316200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:10297200-10316200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:10297400-10312400	Weak transcription	NHLF	lung
20	chr1:10297400-10316200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:10297600-10312400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:10297800-10312400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:10298000-10312400	Weak transcription	HepG2	liver
24	chr1:10298400-10312400	Weak transcription	Right Atrium	heart
25	chr1:10302000-10313200	Weak transcription	Fetal Heart	heart
26	chr1:10302000-10321800	Weak transcription	Esophagus	oesophagus
27	chr1:10302200-10313800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:10302400-10312600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:10302400-10315600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:10302600-10313200	Weak transcription	Fetal Kidney	kidney
31	chr1:10303200-10313400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:10303200-10316000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:10305200-10313200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:10305200-10317200	Weak transcription	Brain Germinal Matrix	brain
35	chr1:10306200-10312600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:10306200-10313400	Weak transcription	Fetal Intestine Large	intestine
37	chr1:10306200-10313600	Weak transcription	Ovary	ovary
38	chr1:10306200-10316000	Weak transcription	Fetal Intestine Small	intestine
39	chr1:10307400-10313200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr1:10307600-10312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:10307600-10340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:10307800-10316200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:10308400-10316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:10308600-10314200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr1:10308800-10314400	Enhancers	Brain Substantia Nigra	brain
46	chr1:10309000-10312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:10309200-10312000	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr1:10309600-10315400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:10309800-10312400	Weak transcription	Adipose Nuclei	Adipose
50	chr1:10309800-10313800	Enhancers	Psoas Muscle	Psoas

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