The 2.0 version of rSNPBase

Variant report

Variant rs12122029
Chromosome Location chr1:10339822-10339823
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10272600-10368200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:10307600-10340400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:10312800-10347200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:10314200-10356400 Weak transcription Small Intestine intestine
5 chr1:10314200-10363400 Weak transcription Fetal Brain Male brain
6 chr1:10314800-10347000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:10315000-10355600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:10315400-10373400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:10316800-10380200 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:10317400-10355200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:10317400-10356400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:10317600-10355600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr1:10318400-10367600 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:10320600-10363000 Weak transcription Gastric stomach
15 chr1:10321400-10359000 Strong transcription Monocytes-CD14+_RO01746 blood
16 chr1:10321600-10340600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:10321800-10353200 Strong transcription Breast Myoepithelial Primary Cells Breast
18 chr1:10322000-10340600 Strong transcription HSMM muscle
19 chr1:10322400-10343400 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr1:10322400-10356400 Weak transcription Esophagus oesophagus
21 chr1:10322600-10342000 Weak transcription Rectal Smooth Muscle rectum
22 chr1:10322600-10343400 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:10322800-10363200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr1:10323200-10342000 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:10324200-10356200 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr1:10324400-10356400 Weak transcription Primary B cells from peripheral blood blood
27 chr1:10324600-10340200 Weak transcription Psoas Muscle Psoas
28 chr1:10325600-10340400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:10326000-10352000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:10326400-10340000 Strong transcription NHDF-Ad bronchial
31 chr1:10327200-10352400 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr1:10327800-10340600 Weak transcription NHLF lung
33 chr1:10328400-10342200 Weak transcription Colonic Mucosa Colon
34 chr1:10328400-10347000 Weak transcription Aorta Aorta
35 chr1:10328600-10342000 Weak transcription Fetal Kidney kidney
36 chr1:10328600-10345000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:10329400-10342000 Weak transcription HMEC breast
38 chr1:10330600-10344400 Strong transcription iPS-20b Cell Line embryonic stem cell
39 chr1:10331600-10368000 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:10331800-10356400 Weak transcription Fetal Thymus thymus
41 chr1:10332000-10342400 Weak transcription Dnd41 blood
42 chr1:10332200-10343400 Weak transcription K562 blood
43 chr1:10332200-10363800 Weak transcription Thymus Thymus
44 chr1:10332400-10342000 Weak transcription Fetal Heart heart
45 chr1:10333200-10359200 Weak transcription Stomach Mucosa stomach
46 chr1:10334000-10345400 Strong transcription HSMMtube muscle
47 chr1:10334400-10360000 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr1:10334600-10347200 Strong transcription iPS-18 Cell Line embryonic stem cell
49 chr1:10334800-10345000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr1:10335000-10340000 Strong transcription Fetal Brain Female brain

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Last update: Aug 31, 2015