The 2.0 version of rSNPBase

Variant report

Variant rs6541084
Chromosome Location chr1:10285447-10285448
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10272600-10368200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:10272800-10290000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr1:10272800-10296600 Weak transcription Placenta Amnion Placenta Amnion
4 chr1:10276800-10311800 Weak transcription Hela-S3 cervix
5 chr1:10277000-10322000 Weak transcription Spleen Spleen
6 chr1:10278400-10291000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:10278400-10295200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr1:10278400-10302000 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:10278600-10294800 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr1:10278800-10292400 Weak transcription Fetal Muscle Leg muscle
11 chr1:10278800-10296400 Weak transcription Fetal Lung lung
12 chr1:10279800-10297800 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr1:10281000-10294800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:10282600-10291000 Weak transcription Fetal Brain Female brain
15 chr1:10283000-10288600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr1:10283600-10286200 Enhancers Skeletal Muscle Male skeletal muscle
17 chr1:10283600-10287400 Enhancers Left Ventricle heart
18 chr1:10284000-10285800 Enhancers Psoas Muscle Psoas
19 chr1:10284000-10286800 Enhancers Brain Substantia Nigra brain
20 chr1:10284000-10287600 Enhancers Brain Anterior Caudate brain
21 chr1:10284000-10289200 Enhancers Brain Hippocampus Middle brain
22 chr1:10284400-10286000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:10284400-10286200 Enhancers Rectal Smooth Muscle rectum
24 chr1:10284400-10286400 Enhancers Right Ventricle heart
25 chr1:10284400-10286800 Enhancers Brain Cingulate Gyrus brain
26 chr1:10284400-10287000 Enhancers Brain Inferior Temporal Lobe brain
27 chr1:10284400-10289200 Enhancers Skeletal Muscle Female skeletal muscle
28 chr1:10284600-10285600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:10284600-10285600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
30 chr1:10284600-10285800 Enhancers Fetal Adrenal Gland Adrenal Gland
31 chr1:10284600-10286000 Enhancers Brain Angular Gyrus brain
32 chr1:10284600-10286200 Enhancers Muscle Satellite Cultured Cells --
33 chr1:10284800-10286000 Enhancers Right Atrium heart
34 chr1:10284800-10286600 Enhancers Osteobl bone
35 chr1:10284800-10311000 Weak transcription Small Intestine intestine
36 chr1:10285000-10285600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr1:10285000-10285600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:10285000-10285600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:10285000-10285600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:10285000-10285600 Enhancers Lung lung
41 chr1:10285000-10285800 Enhancers Sigmoid Colon Sigmoid Colon
42 chr1:10285000-10286000 Enhancers Cortex derived primary cultured neurospheres brain
43 chr1:10285000-10286000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:10285000-10286000 Enhancers Fetal Heart heart
45 chr1:10285000-10286000 Enhancers Stomach Smooth Muscle stomach
46 chr1:10285000-10286200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
47 chr1:10285000-10286200 Enhancers Ovary ovary
48 chr1:10285000-10286200 Enhancers NH-A brain
49 chr1:10285000-10286400 Enhancers Breast Myoepithelial Primary Cells Breast
50 chr1:10285000-10286400 Enhancers HSMM muscle

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Last update: Aug 31, 2015