The 2.0 version of rSNPBase

Variant report

Variant rs17402762
Chromosome Location chr1:10414470-10414471
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10364600-10431000 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:10380400-10436600 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:10380600-10426400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:10381000-10436400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:10385200-10436400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:10386000-10434800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:10386400-10421600 Weak transcription Hela-S3 cervix
8 chr1:10393200-10415800 Strong transcription Monocytes-CD14+_RO01746 blood
9 chr1:10393200-10431200 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:10393600-10430800 Strong transcription Primary neutrophils fromperipheralblood blood
11 chr1:10393800-10444600 Strong transcription Cortex derived primary cultured neurospheres brain
12 chr1:10394200-10415800 Strong transcription Adipose Nuclei Adipose
13 chr1:10394200-10415800 Strong transcription Duodenum Mucosa Duodenum
14 chr1:10394200-10441800 Strong transcription Liver Liver
15 chr1:10395600-10425200 Weak transcription Thymus Thymus
16 chr1:10397600-10421000 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:10397800-10425400 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr1:10397800-10434800 Weak transcription Primary B cells from peripheral blood blood
19 chr1:10398000-10421000 Weak transcription NHEK skin
20 chr1:10398000-10438000 Weak transcription GM12878-XiMat blood
21 chr1:10398400-10425400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr1:10399000-10420800 Weak transcription NHLF lung
23 chr1:10400000-10416200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:10400200-10438200 Weak transcription Stomach Mucosa stomach
25 chr1:10400600-10434600 Weak transcription K562 blood
26 chr1:10400600-10446400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:10400600-10447400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:10401600-10420800 Weak transcription Fetal Heart heart
29 chr1:10401600-10421000 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:10401800-10415200 Strong transcription HSMMtube muscle
31 chr1:10402200-10418400 Weak transcription A549 lung
32 chr1:10402600-10437200 Strong transcription Fetal Adrenal Gland Adrenal Gland
33 chr1:10403800-10421000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:10404200-10421000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:10404400-10421000 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:10404400-10421200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:10404400-10433800 Weak transcription Dnd41 blood
38 chr1:10404600-10421400 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:10404600-10421800 Weak transcription Fetal Brain Male brain
40 chr1:10405000-10421600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:10407800-10421000 Weak transcription HMEC breast
42 chr1:10408800-10420800 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:10408800-10421000 Weak transcription Primary B cells from cord blood blood
44 chr1:10409000-10420200 Weak transcription Fetal Kidney kidney
45 chr1:10409000-10421600 Weak transcription NH-A brain
46 chr1:10409000-10425200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
47 chr1:10409000-10427800 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:10409200-10420800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:10409200-10421000 Weak transcription H9 Cell Line embryonic stem cell
50 chr1:10409200-10421000 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015