Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10864448	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11121526	0.89[ASN][1000 genomes]
rs11580854	0.80[ASN][1000 genomes]
rs12116966	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117765	0.83[EUR][1000 genomes]
rs12728071	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12740371	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12757820	0.86[EUR][1000 genomes]
rs1974293	0.83[ASN][1000 genomes]
rs2027327	0.82[ASN][1000 genomes]
rs2027330	0.83[ASN][1000 genomes]
rs2105212	0.80[ASN][1000 genomes]
rs35257796	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828081	0.96[ASN][1000 genomes]
rs3903151	0.99[ASN][1000 genomes]
rs4348727	0.86[EUR][1000 genomes]
rs4846197	0.80[ASN][1000 genomes]
rs55676616	0.80[ASN][1000 genomes]
rs61775872	0.82[ASN][1000 genomes]
rs61775885	0.80[ASN][1000 genomes]
rs61775887	0.80[ASN][1000 genomes]
rs61784572	0.87[EUR][1000 genomes]
rs6660928	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670208	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670320	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6675036	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10241200-10259000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:10250000-10261000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:10250000-10269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:10256800-10258400	Enhancers	NH-A	brain
5	chr1:10256800-10258600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:10257400-10264200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:10257600-10261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:10257800-10258600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:10258000-10258600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:10258000-10258600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:10258000-10258600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:10258200-10258400	Enhancers	Hela-S3	cervix
13	chr1:10258200-10258400	Enhancers	HSMM	muscle
14	chr1:10258200-10258400	Enhancers	NHDF-Ad	bronchial
15	chr1:10258200-10258400	Enhancers	NHEK	skin
16	chr1:10258200-10258600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:10258200-10258600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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