Variant report

Variant	rs61784572
Chromosome Location	chr1:10259917-10259918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11121528	0.84[EUR][1000 genomes]
rs11121531	0.81[EUR][1000 genomes]
rs11121532	0.84[EUR][1000 genomes]
rs12117765	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12122107	0.81[EUR][1000 genomes]
rs12133125	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12757820	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35111552	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35187325	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35766535	0.80[EUR][1000 genomes]
rs4348727	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61784566	0.82[EUR][1000 genomes]
rs61784570	0.87[EUR][1000 genomes]
rs61784574	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61784579	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61784572	KIF1B	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10250000-10261000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:10250000-10269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:10257400-10264200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:10257600-10261200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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