The 2.0 version of rSNPBase

Variant report

Variant rs12728259
Chromosome Location chr1:228443587-228443588
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228430600-228447000 Weak transcription Stomach Smooth Muscle stomach
2 chr1:228433400-228449400 Weak transcription Brain Anterior Caudate brain
3 chr1:228434600-228444400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:228434600-228455400 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:228434800-228444000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:228434800-228444000 Weak transcription Ovary ovary
7 chr1:228434800-228444600 Strong transcription Dnd41 blood
8 chr1:228434800-228445800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:228434800-228460000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:228434800-228462400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr1:228435000-228444000 Weak transcription Esophagus oesophagus
12 chr1:228435000-228446000 Weak transcription A549 lung
13 chr1:228435200-228449400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:228435200-228449600 Strong transcription Primary T cells from cord blood blood
15 chr1:228435200-228462800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:228435600-228462600 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr1:228435800-228446400 Weak transcription Fetal Heart heart
18 chr1:228435800-228450200 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr1:228436800-228447000 Weak transcription Psoas Muscle Psoas
20 chr1:228437000-228443800 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr1:228437000-228455600 Weak transcription Hela-S3 cervix
22 chr1:228438000-228443800 Weak transcription Gastric stomach
23 chr1:228438000-228444800 Weak transcription Pancreas Pancrea
24 chr1:228438200-228443800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:228438200-228443800 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr1:228438200-228444200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:228438400-228447000 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr1:228438400-228455600 Weak transcription Placenta Amnion Placenta Amnion
29 chr1:228438800-228444000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr1:228439000-228444000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:228439200-228444000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr1:228439200-228445200 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:228439200-228449400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:228439400-228444200 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:228439600-228443800 Weak transcription H1 Cell Line embryonic stem cell
36 chr1:228439600-228444200 Weak transcription Spleen Spleen
37 chr1:228439800-228448800 Weak transcription Primary T cells fromperipheralblood blood
38 chr1:228440000-228444000 Weak transcription Lung lung
39 chr1:228440200-228443800 Weak transcription Brain Germinal Matrix brain
40 chr1:228440200-228444000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:228440200-228444200 Weak transcription Fetal Thymus thymus
42 chr1:228440200-228447000 Weak transcription Right Atrium heart
43 chr1:228440400-228443600 Weak transcription Primary hematopoietic stem cells blood
44 chr1:228440400-228443800 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr1:228440400-228444200 Strong transcription Skeletal Muscle Male skeletal muscle
46 chr1:228440600-228443600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:228440800-228444000 Weak transcription HSMMtube muscle
48 chr1:228441200-228450400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:228441400-228444600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr1:228442400-228443800 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015