Variant report

Variant	rs12729745
Chromosome Location	chr1:192662028-192662029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10921238	0.81[AFR][1000 genomes]
rs12734103	0.91[AFR][1000 genomes]
rs12747575	0.83[AFR][1000 genomes]
rs12749077	0.91[AFR][1000 genomes]
rs12751300	0.84[AFR][1000 genomes]
rs12754700	0.80[AFR][1000 genomes]
rs12754879	0.80[AFR][1000 genomes]
rs16834649	0.84[AFR][1000 genomes]
rs16834665	0.83[AFR][1000 genomes]
rs1933703	0.88[AFR][1000 genomes]
rs1933704	0.80[AFR][1000 genomes]
rs1933705	0.81[AFR][1000 genomes]
rs1933706	0.81[AFR][1000 genomes]
rs2146609	0.80[AFR][1000 genomes]
rs34192146	0.80[AFR][1000 genomes]
rs34208957	0.90[AFR][1000 genomes]
rs34349890	0.82[AFR][1000 genomes]
rs34494529	0.90[AFR][1000 genomes]
rs34725057	0.90[AFR][1000 genomes]
rs34889140	0.83[AFR][1000 genomes]
rs35164338	0.90[AFR][1000 genomes]
rs35511097	0.91[AFR][1000 genomes]
rs35556099	0.90[AFR][1000 genomes]
rs35557412	0.88[AFR][1000 genomes]
rs35679411	0.87[AFR][1000 genomes]
rs35766898	0.83[AFR][1000 genomes]
rs35918607	0.90[AFR][1000 genomes]
rs4995860	0.87[AFR][1000 genomes]
rs4995861	0.86[AFR][1000 genomes]
rs71639163	0.88[AFR][1000 genomes]
rs71639164	0.81[AFR][1000 genomes]
rs71639171	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192659200-192663200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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