Variant report

Variant	rs16834649
Chromosome Location	chr1:192667887-192667888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10489516	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10921234	0.81[AFR][1000 genomes]
rs10921238	0.82[AFR][1000 genomes]
rs12724227	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12726547	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12727381	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12727538	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12729745	0.84[AFR][1000 genomes]
rs12730514	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12731540	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12733584	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12734103	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743947	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12744645	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12744940	0.89[EUR][1000 genomes]
rs12747575	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12748165	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12749077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749254	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12750259	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12751300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12751942	0.89[EUR][1000 genomes]
rs12752676	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12754700	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12754879	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12755754	0.93[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12757567	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16834613	0.87[ASN][1000 genomes]
rs16834654	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834657	0.89[EUR][1000 genomes]
rs16834665	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834668	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834673	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834675	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834677	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834679	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834688	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834690	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16834693	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16834698	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16834703	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16834706	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17583672	1.00[CEU][hapmap]
rs17585105	0.82[EUR][1000 genomes]
rs1933703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933704	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1933705	0.82[AFR][1000 genomes]
rs1933706	0.82[AFR][1000 genomes]
rs2104248	0.81[AFR][1000 genomes]
rs2146607	0.81[AFR][1000 genomes]
rs2146609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181445	0.81[AFR][1000 genomes]
rs2296022	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs2296023	0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs33945715	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34097781	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34100239	0.82[EUR][1000 genomes]
rs34113351	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34192146	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34208957	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34347367	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34348864	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34349890	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34373724	0.89[EUR][1000 genomes]
rs34494529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34495773	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34539703	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34624213	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34725057	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34823827	0.82[EUR][1000 genomes]
rs34889140	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34960843	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34987447	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35103963	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35164338	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35234624	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35431149	0.82[EUR][1000 genomes]
rs35491260	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35511097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35555343	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35556099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35557412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35766898	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35918607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36034041	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36057899	0.82[EUR][1000 genomes]
rs36082277	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36087525	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36090855	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36125019	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3818329	0.84[ASN][1000 genomes]
rs4603110	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs4995860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4995861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073640	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59228642	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6656146	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6673110	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6681333	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6691305	0.82[EUR][1000 genomes]
rs71639163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71639164	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71639165	0.89[EUR][1000 genomes]
rs71639166	0.80[AFR][1000 genomes]
rs71639168	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71639169	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71639171	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71639172	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71639173	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71639174	0.82[EUR][1000 genomes]
rs74130418	0.87[ASN][1000 genomes]
rs74130421	0.87[ASN][1000 genomes]
rs74130422	0.87[ASN][1000 genomes]
rs74130449	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs74130459	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130460	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130461	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130462	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130463	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130464	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74130467	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9287125	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192666800-192669400	Enhancers	HepG2	liver
2	chr1:192667600-192668000	Enhancers	Hela-S3	cervix
3	chr1:192667600-192673000	Enhancers	Primary neutrophils fromperipheralblood	blood

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