Variant report

Variant	rs4603110
Chromosome Location	chr1:192621795-192621796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12734103	0.82[ASN][1000 genomes]
rs12749077	0.82[ASN][1000 genomes]
rs12751300	0.82[ASN][1000 genomes]
rs16834606	0.82[EUR][1000 genomes]
rs16834613	0.95[ASN][1000 genomes]
rs16834649	0.82[ASN][1000 genomes]
rs1933703	0.85[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2146609	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs2296022	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296023	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs34208957	0.82[ASN][1000 genomes]
rs34494529	0.82[ASN][1000 genomes]
rs34725057	0.82[ASN][1000 genomes]
rs35164338	0.82[ASN][1000 genomes]
rs35511097	0.82[ASN][1000 genomes]
rs35556099	0.82[ASN][1000 genomes]
rs35557412	0.82[ASN][1000 genomes]
rs35679411	0.82[ASN][1000 genomes]
rs35918607	0.82[ASN][1000 genomes]
rs3818329	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41300867	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4517332	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4657831	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4657832	0.82[EUR][1000 genomes]
rs4658062	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4658063	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4658065	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4658066	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4658067	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4995860	0.82[ASN][1000 genomes]
rs4995861	0.82[ASN][1000 genomes]
rs6428129	0.82[EUR][1000 genomes]
rs6428130	0.82[EUR][1000 genomes]
rs6656631	0.82[EUR][1000 genomes]
rs6656719	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6659808	0.82[EUR][1000 genomes]
rs6659815	1.00[GIH][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6663587	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6663609	0.82[EUR][1000 genomes]
rs6664555	0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6666658	0.82[EUR][1000 genomes]
rs6666667	0.82[EUR][1000 genomes]
rs6688640	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6691511	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6691609	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6700053	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes]
rs6701059	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6701375	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6703417	0.82[EUR][1000 genomes]
rs6703926	1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71639163	0.82[ASN][1000 genomes]
rs74130418	0.95[ASN][1000 genomes]
rs74130421	0.95[ASN][1000 genomes]
rs74130422	0.95[ASN][1000 genomes]
rs7521159	0.95[AFR][1000 genomes]
rs7544449	1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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