Variant report
| Variant | rs6664555 |
|---|---|
| Chromosome Location | chr1:192627704-192627705 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16834606 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41300867 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4517332 | 1.00[EUR][1000 genomes] |
| rs4603110 | 0.85[YRI][hapmap] |
| rs4657831 | 1.00[EUR][1000 genomes] |
| rs4657832 | 1.00[EUR][1000 genomes] |
| rs4658062 | 1.00[EUR][1000 genomes] |
| rs4658063 | 1.00[EUR][1000 genomes] |
| rs4658066 | 1.00[EUR][1000 genomes] |
| rs4658067 | 1.00[EUR][1000 genomes] |
| rs6428127 | 0.82[EUR][1000 genomes] |
| rs6428129 | 1.00[EUR][1000 genomes] |
| rs6428130 | 1.00[EUR][1000 genomes] |
| rs6656631 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6656719 | 1.00[EUR][1000 genomes] |
| rs6659808 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6659815 | 1.00[EUR][1000 genomes] |
| rs6663587 | 1.00[EUR][1000 genomes] |
| rs6663609 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6666658 | 1.00[EUR][1000 genomes] |
| rs6666667 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6688640 | 1.00[EUR][1000 genomes] |
| rs6691511 | 1.00[EUR][1000 genomes] |
| rs6691609 | 1.00[EUR][1000 genomes] |
| rs6700053 | 0.93[EUR][1000 genomes] |
| rs6701059 | 1.00[EUR][1000 genomes] |
| rs6701375 | 1.00[EUR][1000 genomes] |
| rs6703417 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6703926 | 1.00[EUR][1000 genomes] |
| rs7521159 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7544449 | 0.85[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532618 | chr1:192537006-193149179 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
| 2 | nsv548660 | chr1:192609268-192945348 | Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192627400-192628600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 2 | chr1:192627600-192628400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
