Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192607291..192610228-chr1:192623335..192626008,2	K562	blood:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16834606	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41300867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4517332	0.93[EUR][1000 genomes]
rs4657831	0.93[EUR][1000 genomes]
rs4657832	0.93[EUR][1000 genomes]
rs4658062	0.93[EUR][1000 genomes]
rs4658063	0.93[EUR][1000 genomes]
rs4658066	0.93[EUR][1000 genomes]
rs4658067	0.93[EUR][1000 genomes]
rs6428129	0.93[EUR][1000 genomes]
rs6428130	0.93[EUR][1000 genomes]
rs6656631	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6656719	0.93[EUR][1000 genomes]
rs6659808	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6659815	0.93[EUR][1000 genomes]
rs6663587	0.93[EUR][1000 genomes]
rs6663609	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6664555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6666658	0.93[EUR][1000 genomes]
rs6666667	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6688640	0.93[EUR][1000 genomes]
rs6691511	0.93[EUR][1000 genomes]
rs6691609	0.93[EUR][1000 genomes]
rs6700053	0.87[EUR][1000 genomes]
rs6701059	0.93[EUR][1000 genomes]
rs6701375	0.93[EUR][1000 genomes]
rs6703417	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6703926	0.93[EUR][1000 genomes]
rs7544449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192624600-192627400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:192624600-192627600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:192625400-192626400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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