Variant report

Variant	rs16834606
Chromosome Location	chr1:192639447-192639448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs41300867	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4517332	1.00[EUR][1000 genomes]
rs4657831	1.00[EUR][1000 genomes]
rs4657832	1.00[EUR][1000 genomes]
rs4658062	1.00[EUR][1000 genomes]
rs4658063	1.00[EUR][1000 genomes]
rs4658066	1.00[EUR][1000 genomes]
rs4658067	1.00[EUR][1000 genomes]
rs6428127	0.82[EUR][1000 genomes]
rs6428129	1.00[EUR][1000 genomes]
rs6428130	1.00[EUR][1000 genomes]
rs6656631	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656719	1.00[EUR][1000 genomes]
rs6659808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6659815	1.00[EUR][1000 genomes]
rs6663587	1.00[EUR][1000 genomes]
rs6663609	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664555	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666658	1.00[EUR][1000 genomes]
rs6666667	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6688640	1.00[EUR][1000 genomes]
rs6691511	1.00[EUR][1000 genomes]
rs6691609	1.00[EUR][1000 genomes]
rs6700053	0.93[EUR][1000 genomes]
rs6701059	1.00[EUR][1000 genomes]
rs6701375	1.00[EUR][1000 genomes]
rs6703417	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703926	1.00[EUR][1000 genomes]
rs7521159	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7544449	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192638200-192644000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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