Variant report

Variant	rs16834613
Chromosome Location	chr1:192645772-192645773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12734103	0.87[ASN][1000 genomes]
rs12749077	0.87[ASN][1000 genomes]
rs12751300	0.87[ASN][1000 genomes]
rs12755754	0.84[ASW][hapmap]
rs16834649	0.87[ASN][1000 genomes]
rs16834665	0.82[ASN][1000 genomes]
rs1933703	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1933710	0.93[AFR][1000 genomes]
rs2146609	0.92[ASW][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs2296022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2296023	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[ASN][1000 genomes]
rs34208957	0.87[ASN][1000 genomes]
rs34494529	0.87[ASN][1000 genomes]
rs34725057	0.87[ASN][1000 genomes]
rs34889140	0.82[ASN][1000 genomes]
rs35052149	1.00[EUR][1000 genomes]
rs35164338	0.87[ASN][1000 genomes]
rs35511097	0.87[ASN][1000 genomes]
rs35556099	0.87[ASN][1000 genomes]
rs35557412	0.87[ASN][1000 genomes]
rs35679411	0.87[ASN][1000 genomes]
rs35766898	0.82[ASN][1000 genomes]
rs35918607	0.87[ASN][1000 genomes]
rs3818329	0.97[ASN][1000 genomes]
rs4603110	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4658073	1.00[EUR][1000 genomes]
rs4995860	0.87[ASN][1000 genomes]
rs4995861	0.87[ASN][1000 genomes]
rs56786813	0.82[AFR][1000 genomes]
rs58114792	0.99[AFR][1000 genomes]
rs59176125	0.99[AFR][1000 genomes]
rs71639163	0.87[ASN][1000 genomes]
rs71639164	0.82[ASN][1000 genomes]
rs74130418	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130424	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192644400-192646200	Enhancers	HUVEC	blood vessel
2	chr1:192645600-192646000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:192645600-192646000	Enhancers	Small Intestine	intestine
4	chr1:192645600-192646200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:192645600-192646400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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