Variant report

Variant	rs35766898
Chromosome Location	chr1:192671394-192671395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192670911..192673687-chr1:192675700..192678097,2	K562	blood:
2	chr1:192665447..192667038-chr1:192670205..192672534,2	K562	blood:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10489516	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10921238	0.81[AFR][1000 genomes]
rs12724227	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12726547	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12727381	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12727538	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12729745	0.83[AFR][1000 genomes]
rs12730514	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12731540	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12733584	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12734103	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12743947	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12744645	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12744940	0.89[EUR][1000 genomes]
rs12747575	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12748165	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12749077	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12749254	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12750259	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12751300	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12751942	0.89[EUR][1000 genomes]
rs12752676	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12754700	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12754879	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12755754	0.93[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12757567	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834613	0.82[ASN][1000 genomes]
rs16834649	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834654	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834657	0.89[EUR][1000 genomes]
rs16834665	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834668	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834673	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834675	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834677	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834679	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834688	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16834690	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16834693	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16834698	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834703	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834706	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17583672	1.00[CEU][hapmap]
rs17585105	0.82[EUR][1000 genomes]
rs1933703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933704	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1933705	0.81[AFR][1000 genomes]
rs1933706	0.81[AFR][1000 genomes]
rs2146609	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296022	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs2296023	0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap]
rs33945715	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34097781	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34100239	0.82[EUR][1000 genomes]
rs34113351	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34192146	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34208957	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34347367	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34348864	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34349890	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34373724	0.89[EUR][1000 genomes]
rs34494529	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34495773	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34539703	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34624213	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34725057	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34823827	0.82[EUR][1000 genomes]
rs34889140	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34960843	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34987447	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35103963	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35164338	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35234624	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35431149	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35491260	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35511097	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35555343	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35556099	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35557412	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35679411	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35918607	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36034041	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36057899	0.82[EUR][1000 genomes]
rs36082277	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36087525	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36090855	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs36125019	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4603110	0.85[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap]
rs4995860	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4995861	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56073640	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59228642	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6656146	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6673110	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6681333	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6691305	0.82[EUR][1000 genomes]
rs71639163	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71639164	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71639165	0.89[EUR][1000 genomes]
rs71639166	0.81[AFR][1000 genomes]
rs71639168	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71639169	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs71639171	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71639172	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71639173	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71639174	0.82[EUR][1000 genomes]
rs74130418	0.82[ASN][1000 genomes]
rs74130421	0.82[ASN][1000 genomes]
rs74130422	0.82[ASN][1000 genomes]
rs74130449	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs74130459	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130460	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130461	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130462	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130463	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130464	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74130467	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9287125	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192667600-192673000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:192669000-192671400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:192669000-192672000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:192669000-192672000	Enhancers	Hela-S3	cervix
5	chr1:192669000-192673200	Enhancers	NHLF	lung
6	chr1:192669200-192672400	Enhancers	Fetal Intestine Large	intestine
7	chr1:192669200-192672400	Enhancers	Osteobl	bone
8	chr1:192669200-192672800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:192669400-192671800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:192669400-192671800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:192669400-192671800	Enhancers	NHDF-Ad	bronchial
12	chr1:192669400-192672200	Enhancers	HUVEC	blood vessel
13	chr1:192669600-192671400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:192669600-192671400	Enhancers	Fetal Heart	heart
15	chr1:192669600-192671400	Enhancers	Fetal Intestine Small	intestine
16	chr1:192669600-192671600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr1:192669600-192671600	Enhancers	Rectal Smooth Muscle	rectum
18	chr1:192669600-192671600	Enhancers	Stomach Mucosa	stomach
19	chr1:192669600-192671800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:192669600-192671800	Enhancers	HSMMtube	muscle
21	chr1:192669600-192672000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:192669600-192672200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:192669600-192673200	Enhancers	HMEC	breast
24	chr1:192669600-192674200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:192669800-192671400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:192670000-192671600	Enhancers	Primary hematopoietic stem cells	blood
27	chr1:192670000-192672200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr1:192670200-192671800	Enhancers	Liver	Liver
29	chr1:192670200-192672600	Enhancers	NH-A	brain
30	chr1:192670200-192676200	Enhancers	HepG2	liver
31	chr1:192670400-192671800	Enhancers	NHEK	skin
32	chr1:192670600-192671400	Flanking Active TSS	A549	lung
33	chr1:192670600-192672000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr1:192671000-192671600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:192671000-192671600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:192671000-192671600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr1:192671000-192671600	Enhancers	HSMM	muscle
38	chr1:192671000-192671800	Weak transcription	Placenta	Placenta
39	chr1:192671200-192671400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:192671200-192671800	Enhancers	Fetal Lung	lung
41	chr1:192671200-192672000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr1:192671200-192672200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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