Variant report

Variant	rs10489516
Chromosome Location	chr1:192719371-192719372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12733584	0.87[EUR][1000 genomes]
rs12734103	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12749077	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12751300	0.90[ASN][1000 genomes]
rs12754700	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754879	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12755754	0.83[TSI][hapmap]
rs12757567	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834649	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16834665	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16834690	0.87[EUR][1000 genomes]
rs16834693	0.87[EUR][1000 genomes]
rs16834698	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834703	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834706	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585105	0.87[EUR][1000 genomes]
rs17585265	0.83[EUR][1000 genomes]
rs1933703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146609	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296022	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2296023	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs34100239	0.87[EUR][1000 genomes]
rs34208957	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34348864	0.87[EUR][1000 genomes]
rs34349890	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34494529	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34624213	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34725057	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34823827	0.87[EUR][1000 genomes]
rs34889140	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34987447	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35164338	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35234624	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs35431149	0.87[EUR][1000 genomes]
rs35511097	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35555343	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35556099	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35557412	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35679411	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35766898	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35918607	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36057899	0.87[EUR][1000 genomes]
rs4603110	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4658064	1.00[CEU][hapmap]
rs4995860	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4995861	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56073640	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59228642	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673110	0.87[EUR][1000 genomes]
rs6691305	0.87[EUR][1000 genomes]
rs71639163	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71639164	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71639171	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71639172	0.87[EUR][1000 genomes]
rs71639173	0.87[EUR][1000 genomes]
rs71639174	0.87[EUR][1000 genomes]
rs74130459	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130460	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130461	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130462	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130463	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130464	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74130467	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv997662	chr1:192715815-192740227	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192718400-192719400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:192718400-192719400	Enhancers	Fetal Heart	heart
3	chr1:192718600-192719400	Enhancers	Adipose Nuclei	Adipose
4	chr1:192718600-192719400	Enhancers	Pancreatic Islets	Pancreatic Islet

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