Variant report
| Variant | rs2296023 |
|---|---|
| Chromosome Location | chr1:192627286-192627287 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10489515 | 1.00[CEU][hapmap] |
| rs10921269 | 1.00[CEU][hapmap] |
| rs12734103 | 0.84[ASN][1000 genomes] |
| rs12749077 | 0.84[ASN][1000 genomes] |
| rs12751300 | 0.84[ASN][1000 genomes] |
| rs1418719 | 1.00[CEU][hapmap] |
| rs16834594 | 1.00[CEU][hapmap] |
| rs16834613 | 0.97[ASN][1000 genomes] |
| rs16834649 | 0.84[ASN][1000 genomes] |
| rs16834852 | 1.00[CEU][hapmap] |
| rs16834872 | 1.00[CEU][hapmap] |
| rs16834876 | 1.00[CEU][hapmap] |
| rs1933703 | 0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2146609 | 0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap] |
| rs2296022 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34208957 | 0.84[ASN][1000 genomes] |
| rs34494529 | 0.84[ASN][1000 genomes] |
| rs34725057 | 0.84[ASN][1000 genomes] |
| rs35164338 | 0.84[ASN][1000 genomes] |
| rs35511097 | 0.84[ASN][1000 genomes] |
| rs35556099 | 0.84[ASN][1000 genomes] |
| rs35557412 | 0.84[ASN][1000 genomes] |
| rs35679411 | 0.84[ASN][1000 genomes] |
| rs35918607 | 0.84[ASN][1000 genomes] |
| rs3818329 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4603110 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap] |
| rs4658065 | 1.00[CEU][hapmap] |
| rs4995860 | 0.84[ASN][1000 genomes] |
| rs4995861 | 0.84[ASN][1000 genomes] |
| rs71639163 | 0.84[ASN][1000 genomes] |
| rs74130418 | 0.97[ASN][1000 genomes] |
| rs74130421 | 0.97[ASN][1000 genomes] |
| rs74130422 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532618 | chr1:192537006-193149179 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
| 2 | nsv548660 | chr1:192609268-192945348 | Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192624600-192627400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 2 | chr1:192624600-192627600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
