Variant report

Variant	rs4658065
Chromosome Location	chr1:192618182-192618183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489515	1.00[CEU][hapmap]
rs10921269	1.00[CEU][hapmap]
rs1418719	1.00[CEU][hapmap]
rs16834594	1.00[CEU][hapmap]
rs16834852	1.00[CEU][hapmap]
rs16834872	1.00[CEU][hapmap]
rs16834876	1.00[CEU][hapmap]
rs2146608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2296022	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2296023	1.00[CEU][hapmap]
rs3818329	1.00[JPT][hapmap]
rs4517332	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4603110	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4633271	0.92[ASN][1000 genomes]
rs4657831	1.00[ASN][1000 genomes]
rs4657832	1.00[ASN][1000 genomes]
rs4658062	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4658063	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4658066	1.00[ASN][1000 genomes]
rs4658067	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61741287	1.00[ASN][1000 genomes]
rs6428127	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6428129	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6428130	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6656719	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6659815	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6659935	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663587	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6666658	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6688640	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6690375	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691511	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6691609	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6700053	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6701059	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6701375	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6703926	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72736655	0.88[ASN][1000 genomes]
rs7544449	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv467005	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548659	chr1:192549912-192625360	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192600200-192620400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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