Variant report
| Variant | rs6690375 |
|---|---|
| Chromosome Location | chr1:192615919-192615920 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs2146608 | 1.00[ASN][1000 genomes] |
| rs4517332 | 1.00[ASN][1000 genomes] |
| rs4633271 | 0.92[ASN][1000 genomes] |
| rs4657831 | 1.00[ASN][1000 genomes] |
| rs4657832 | 1.00[ASN][1000 genomes] |
| rs4658062 | 1.00[ASN][1000 genomes] |
| rs4658063 | 1.00[ASN][1000 genomes] |
| rs4658064 | 0.80[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs4658065 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4658066 | 1.00[ASN][1000 genomes] |
| rs4658067 | 1.00[ASN][1000 genomes] |
| rs61741287 | 1.00[ASN][1000 genomes] |
| rs6428127 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6428129 | 1.00[ASN][1000 genomes] |
| rs6428130 | 1.00[ASN][1000 genomes] |
| rs6656719 | 1.00[ASN][1000 genomes] |
| rs6659815 | 1.00[ASN][1000 genomes] |
| rs6659935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6663587 | 1.00[ASN][1000 genomes] |
| rs6666658 | 1.00[ASN][1000 genomes] |
| rs6688640 | 1.00[ASN][1000 genomes] |
| rs6691511 | 1.00[ASN][1000 genomes] |
| rs6691609 | 1.00[ASN][1000 genomes] |
| rs6700053 | 1.00[ASN][1000 genomes] |
| rs6701059 | 1.00[ASN][1000 genomes] |
| rs6701375 | 1.00[ASN][1000 genomes] |
| rs6703926 | 1.00[ASN][1000 genomes] |
| rs72736655 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532618 | chr1:192537006-193149179 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 70 gene(s) | inside rSNPs | diseases |
| 2 | nsv467005 | chr1:192549912-192625360 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv548659 | chr1:192549912-192625360 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv548660 | chr1:192609268-192945348 | Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:192600200-192620400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
