Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs35052149	1.00[AFR][1000 genomes]
rs4517332	1.00[ASN][1000 genomes]
rs4633271	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4657831	1.00[ASN][1000 genomes]
rs4657832	1.00[ASN][1000 genomes]
rs4658062	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4658063	1.00[ASN][1000 genomes]
rs4658065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4658066	1.00[ASN][1000 genomes]
rs4658067	1.00[ASN][1000 genomes]
rs61741287	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6428127	1.00[ASN][1000 genomes]
rs6428129	1.00[ASN][1000 genomes]
rs6428130	1.00[ASN][1000 genomes]
rs6656719	1.00[ASN][1000 genomes]
rs6659815	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6659935	1.00[ASN][1000 genomes]
rs6663587	1.00[ASN][1000 genomes]
rs6666658	1.00[ASN][1000 genomes]
rs6688640	1.00[ASN][1000 genomes]
rs6690375	1.00[ASN][1000 genomes]
rs6691511	1.00[ASN][1000 genomes]
rs6691609	1.00[ASN][1000 genomes]
rs6700053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6701059	1.00[ASN][1000 genomes]
rs6701375	1.00[ASN][1000 genomes]
rs6703926	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72736655	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192624600-192627400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:192624600-192627600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:192626400-192627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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