Variant report

Variant	rs12738175
Chromosome Location	chr1:165551821-165551822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12059369	0.85[ASN][1000 genomes]
rs12084147	0.85[ASN][1000 genomes]
rs176230	0.83[ASN][1000 genomes]
rs1913840	0.83[ASN][1000 genomes]
rs2433136	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2478257	0.81[ASN][1000 genomes]
rs2478258	0.88[ASN][1000 genomes]
rs2485403	0.83[ASN][1000 genomes]
rs2766082	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs285461	0.83[ASN][1000 genomes]
rs285463	0.83[ASN][1000 genomes]
rs285469	0.83[ASN][1000 genomes]
rs285470	0.83[ASN][1000 genomes]
rs41267562	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs422264	0.88[ASN][1000 genomes]
rs6676649	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7512593	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7512674	0.88[ASN][1000 genomes]
rs7522076	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv946479	chr1:165549846-165553079	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3421023	chr1:165550778-165553601	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3402425	chr1:165550853-165553701	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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