Variant report

Variant	rs176230
Chromosome Location	chr1:165498335-165498336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10800104	0.82[ASN][1000 genomes]
rs10918202	0.82[ASN][1000 genomes]
rs10918203	0.82[ASN][1000 genomes]
rs10918204	0.91[ASN][1000 genomes]
rs10918206	0.85[ASN][1000 genomes]
rs11810548	0.85[ASN][1000 genomes]
rs11810716	0.91[ASN][1000 genomes]
rs12069141	0.91[ASN][1000 genomes]
rs12069997	0.91[ASN][1000 genomes]
rs12071681	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12084656	0.82[ASN][1000 genomes]
rs12084745	0.82[ASN][1000 genomes]
rs12092351	0.82[ASN][1000 genomes]
rs12092613	0.91[ASN][1000 genomes]
rs12095088	0.91[ASN][1000 genomes]
rs12738175	0.83[ASN][1000 genomes]
rs169556	0.85[ASN][1000 genomes]
rs1913840	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162143	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2433136	0.85[ASN][1000 genomes]
rs2478257	0.86[ASN][1000 genomes]
rs2478258	0.94[ASN][1000 genomes]
rs2485403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2766082	0.85[ASN][1000 genomes]
rs285461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285463	1.00[ASN][1000 genomes]
rs285469	1.00[ASN][1000 genomes]
rs285470	1.00[ASN][1000 genomes]
rs34505661	0.91[ASN][1000 genomes]
rs41267562	0.88[ASN][1000 genomes]
rs41302541	0.91[ASN][1000 genomes]
rs422264	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs56767425	0.91[ASN][1000 genomes]
rs57348245	0.91[ASN][1000 genomes]
rs59800771	0.91[ASN][1000 genomes]
rs6676649	0.83[ASN][1000 genomes]
rs7512593	0.80[ASN][1000 genomes]
rs7512674	0.83[ASN][1000 genomes]
rs7522076	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434870	chr1:165497978-165500276	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165497000-165501400	Weak transcription	Left Ventricle	heart
2	chr1:165497200-165499400	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:165497200-165499400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:165497200-165501400	Weak transcription	Right Ventricle	heart
5	chr1:165497400-165498400	Enhancers	Fetal Heart	heart

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