Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12743126	0.97[ASN][1000 genomes]
rs1557562	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848423	0.97[ASN][1000 genomes]
rs34605676	0.95[ASN][1000 genomes]
rs34725056	0.97[ASN][1000 genomes]
rs35294987	0.92[ASN][1000 genomes]
rs35357711	0.97[ASN][1000 genomes]
rs35502462	0.97[ASN][1000 genomes]
rs35764701	0.95[ASN][1000 genomes]
rs36037377	0.97[ASN][1000 genomes]
rs36139619	0.89[ASN][1000 genomes]
rs56075990	0.86[EUR][1000 genomes]
rs57442025	0.97[ASN][1000 genomes]
rs57443533	0.97[ASN][1000 genomes]
rs66584940	0.97[ASN][1000 genomes]
rs6683279	0.97[ASN][1000 genomes]
rs71645249	0.97[ASN][1000 genomes]
rs73042498	0.97[ASN][1000 genomes]
rs73042500	0.97[ASN][1000 genomes]
rs73045439	0.87[EUR][1000 genomes]
rs873525	0.97[ASN][1000 genomes]
rs984872	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv831948	chr1:175229631-175407303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2764232	chr1:175387997-175504394	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175370000-175390200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:175385000-175390200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:175388800-175389800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:175388800-175393000	Enhancers	Fetal Intestine Small	intestine
5	chr1:175389000-175389400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:175389000-175389400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:175389000-175389400	Flanking Active TSS	Fetal Intestine Large	intestine
8	chr1:175389000-175389400	Enhancers	Placenta	Placenta
9	chr1:175389000-175389600	Flanking Active TSS	Hela-S3	cervix
10	chr1:175389000-175389600	Enhancers	HMEC	breast
11	chr1:175389000-175389800	Enhancers	NHEK	skin

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