Variant report
| Variant | rs35357711 |
|---|---|
| Chromosome Location | chr1:175411950-175411951 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12743126 | 1.00[ASN][1000 genomes] |
| rs12743133 | 0.97[ASN][1000 genomes] |
| rs1557562 | 0.97[ASN][1000 genomes] |
| rs16848423 | 1.00[ASN][1000 genomes] |
| rs34370670 | 0.82[ASN][1000 genomes] |
| rs34605676 | 0.97[ASN][1000 genomes] |
| rs34725056 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35294987 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35502462 | 1.00[ASN][1000 genomes] |
| rs35764701 | 0.97[ASN][1000 genomes] |
| rs36037377 | 1.00[ASN][1000 genomes] |
| rs36139619 | 0.92[ASN][1000 genomes] |
| rs57442025 | 1.00[ASN][1000 genomes] |
| rs57443533 | 1.00[ASN][1000 genomes] |
| rs66584940 | 1.00[ASN][1000 genomes] |
| rs6683279 | 1.00[ASN][1000 genomes] |
| rs71645249 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73042498 | 1.00[ASN][1000 genomes] |
| rs73042500 | 1.00[ASN][1000 genomes] |
| rs873525 | 1.00[ASN][1000 genomes] |
| rs984872 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2764232 | chr1:175387997-175504394 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv524232 | chr1:175403509-175411978 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1792278 | chr1:175404515-175429913 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3320844 | chr1:175411393-175412254 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3320843 | chr1:175411464-175412174 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3320845 | chr1:175411464-175412174 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 7 | esv10985 | chr1:175411570-175412157 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 8 | nsv517137 | chr1:175411912-175411978 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:175400000-175413800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr1:175411600-175414800 | Weak transcription | Fetal Brain Male | brain |
