Variant report

Variant	rs12751286
Chromosome Location	chr1:112576729-112576730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112576630..112579053-chr1:112581835..112584678,2	K562	blood:
2	chr1:112565249..112566817-chr1:112574638..112577317,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCND3-4	chr1:112573812-112579044	l_114_chr1:112573811-112704763_breast

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12724483	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12749667	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1372861	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443925	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166555	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs171994	1.00[ASN][1000 genomes]
rs17739527	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819209	1.00[ASN][1000 genomes]
rs3008534	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3017628	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34751177	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367572	1.00[ASN][1000 genomes]
rs373157	1.00[ASN][1000 genomes]
rs374902	1.00[ASN][1000 genomes]
rs374958	1.00[ASN][1000 genomes]
rs400151	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4088223	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430680	1.00[ASN][1000 genomes]
rs432663	1.00[ASN][1000 genomes]
rs434800	1.00[ASN][1000 genomes]
rs436173	1.00[ASN][1000 genomes]
rs436818	1.00[ASN][1000 genomes]
rs441740	1.00[ASN][1000 genomes]
rs443625	1.00[ASN][1000 genomes]
rs450822	1.00[ASN][1000 genomes]
rs455228	1.00[ASN][1000 genomes]
rs460443	1.00[ASN][1000 genomes]
rs461311	1.00[ASN][1000 genomes]
rs461553	1.00[ASN][1000 genomes]
rs462936	1.00[ASN][1000 genomes]
rs463983	1.00[ASN][1000 genomes]
rs464357	1.00[ASN][1000 genomes]
rs464819	1.00[ASN][1000 genomes]
rs466206	1.00[ASN][1000 genomes]
rs4838935	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609882	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv831059	chr1:112569062-112724725	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112569600-112578000	Enhancers	Fetal Stomach	stomach
2	chr1:112574400-112577400	Enhancers	Colon Smooth Muscle	Colon
3	chr1:112575800-112577400	Enhancers	Stomach Smooth Muscle	stomach
4	chr1:112576600-112577800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links