Variant report

Variant	rs34751177
Chromosome Location	chr1:112566411-112566412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:112565249..112566817-chr1:112574638..112577317,2	K562	blood:
2	chr1:112558129..112559822-chr1:112565473..112567029,2	MCF-7	breast:
3	chr1:112565683..112570763-chr17:59483597..59489037,9	MCF-7	breast:
4	chr1:112560885..112562575-chr1:112565481..112567798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121068	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12724483	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12749667	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12751286	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372861	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443925	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171994	1.00[ASN][1000 genomes]
rs17739527	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819209	1.00[ASN][1000 genomes]
rs3008534	1.00[ASN][1000 genomes]
rs3017628	1.00[ASN][1000 genomes]
rs367572	1.00[ASN][1000 genomes]
rs373157	1.00[ASN][1000 genomes]
rs374902	1.00[ASN][1000 genomes]
rs374958	1.00[ASN][1000 genomes]
rs400151	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4088223	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430680	1.00[ASN][1000 genomes]
rs432663	1.00[ASN][1000 genomes]
rs434800	1.00[ASN][1000 genomes]
rs436173	1.00[ASN][1000 genomes]
rs436818	1.00[ASN][1000 genomes]
rs441740	1.00[ASN][1000 genomes]
rs443625	1.00[ASN][1000 genomes]
rs450822	1.00[ASN][1000 genomes]
rs455228	1.00[ASN][1000 genomes]
rs460443	1.00[ASN][1000 genomes]
rs461311	1.00[ASN][1000 genomes]
rs461553	1.00[ASN][1000 genomes]
rs462936	1.00[ASN][1000 genomes]
rs463983	1.00[ASN][1000 genomes]
rs464357	1.00[ASN][1000 genomes]
rs464819	1.00[ASN][1000 genomes]
rs466206	1.00[ASN][1000 genomes]
rs4838935	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609882	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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