Variant report

Variant	rs12761105
Chromosome Location	chr10:92613417-92613418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10509612	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186309	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs11591238	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11594126	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11594548	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs11594649	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11813096	0.95[ASN][1000 genomes]
rs11813240	0.94[ASN][1000 genomes]
rs11814840	0.95[ASN][1000 genomes]
rs11817810	0.94[ASN][1000 genomes]
rs12255018	0.87[YRI][hapmap]
rs12411309	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12412496	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.93[ASN][1000 genomes]
rs12413941	0.90[ASN][1000 genomes]
rs12414389	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12414726	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12415970	0.95[ASN][1000 genomes]
rs12761148	0.85[ASN][1000 genomes]
rs12764332	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12764938	0.94[ASN][1000 genomes]
rs12766523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12766851	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs12772924	0.95[ASN][1000 genomes]
rs12774947	0.93[ASN][1000 genomes]
rs12777881	0.83[ASN][1000 genomes]
rs12778269	0.92[ASN][1000 genomes]
rs12779377	0.92[ASN][1000 genomes]
rs12779610	0.92[ASN][1000 genomes]
rs12783703	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs12784621	0.81[ASN][1000 genomes]
rs12785051	0.94[ASN][1000 genomes]
rs1418214	0.94[ASN][1000 genomes]
rs1935346	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935348	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935351	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs2153779	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185707	0.85[ASN][1000 genomes]
rs2420368	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34871116	0.95[ASN][1000 genomes]
rs35449520	0.95[ASN][1000 genomes]
rs35598406	0.94[ASN][1000 genomes]
rs35731058	0.93[ASN][1000 genomes]
rs35863839	0.95[ASN][1000 genomes]
rs36101610	0.93[ASN][1000 genomes]
rs4144423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4272713	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.94[ASN][1000 genomes]
rs4350278	0.83[ASN][1000 genomes]
rs4350279	0.82[ASN][1000 genomes]
rs4406742	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4459202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933195	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs4933199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933607	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.93[ASN][1000 genomes]
rs4933608	0.94[ASN][1000 genomes]
rs4933613	0.95[ASN][1000 genomes]
rs4933620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57825126	0.90[ASN][1000 genomes]
rs58460916	0.95[ASN][1000 genomes]
rs58586220	0.95[ASN][1000 genomes]
rs58868307	0.92[ASN][1000 genomes]
rs59277098	0.91[ASN][1000 genomes]
rs60135579	0.93[ASN][1000 genomes]
rs60748043	0.92[ASN][1000 genomes]
rs61218433	0.91[ASN][1000 genomes]
rs7074715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7075333	0.94[ASN][1000 genomes]
rs7078682	0.93[ASN][1000 genomes]
rs7079426	0.95[ASN][1000 genomes]
rs7084468	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7086484	0.94[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7089533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090415	0.94[ASN][1000 genomes]
rs7090941	0.94[ASN][1000 genomes]
rs7093602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096934	0.95[ASN][1000 genomes]
rs71479059	0.95[ASN][1000 genomes]
rs71503901	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7893260	0.95[ASN][1000 genomes]
rs7893391	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7897751	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92610200-92615000	Weak transcription	Osteobl	bone
3	chr10:92610800-92615000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:92611200-92614000	Weak transcription	HMEC	breast
5	chr10:92612000-92614800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:92612600-92615000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:92612800-92614000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:92613200-92614200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:92613200-92614400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:92613200-92614400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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