Variant report

Variant	rs4933200
Chromosome Location	chr10:92676127-92676128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92671333..92674706-chr10:92675096..92677939,3	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10509612	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186309	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs11591238	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11594126	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11594548	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs11594649	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11813096	0.92[ASN][1000 genomes]
rs11813240	0.90[ASN][1000 genomes]
rs11814840	0.92[ASN][1000 genomes]
rs11817810	0.90[ASN][1000 genomes]
rs12255018	0.87[YRI][hapmap]
rs12411309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12412496	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs12413941	0.87[ASN][1000 genomes]
rs12414389	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12414726	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12415970	0.92[ASN][1000 genomes]
rs12761105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761148	0.81[ASN][1000 genomes]
rs12764332	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12764938	0.90[ASN][1000 genomes]
rs12766523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12766851	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes]
rs12772924	0.92[ASN][1000 genomes]
rs12774947	0.89[ASN][1000 genomes]
rs12778269	0.88[ASN][1000 genomes]
rs12779377	0.88[ASN][1000 genomes]
rs12779610	0.88[ASN][1000 genomes]
rs12783703	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs12785051	0.90[ASN][1000 genomes]
rs1418214	0.90[ASN][1000 genomes]
rs1935346	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935348	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1935351	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs2153779	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2185706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2185707	0.81[ASN][1000 genomes]
rs2420368	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34871116	0.92[ASN][1000 genomes]
rs35449520	0.92[ASN][1000 genomes]
rs35598406	0.90[ASN][1000 genomes]
rs35731058	0.89[ASN][1000 genomes]
rs35863839	0.92[ASN][1000 genomes]
rs36101610	0.89[ASN][1000 genomes]
rs4144423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4272713	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs4406742	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4459202	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933195	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs4933199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933607	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs4933608	0.90[ASN][1000 genomes]
rs4933613	0.92[ASN][1000 genomes]
rs4933620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57825126	0.87[ASN][1000 genomes]
rs58460916	0.92[ASN][1000 genomes]
rs58586220	0.92[ASN][1000 genomes]
rs58868307	0.88[ASN][1000 genomes]
rs59277098	0.87[ASN][1000 genomes]
rs60135579	0.89[ASN][1000 genomes]
rs60748043	0.88[ASN][1000 genomes]
rs61218433	0.87[ASN][1000 genomes]
rs7074715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7075333	0.90[ASN][1000 genomes]
rs7078682	0.89[ASN][1000 genomes]
rs7079426	0.92[ASN][1000 genomes]
rs7084468	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7086484	0.94[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7089533	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090415	0.90[ASN][1000 genomes]
rs7090941	0.90[ASN][1000 genomes]
rs7093602	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096934	0.92[ASN][1000 genomes]
rs71479059	0.92[ASN][1000 genomes]
rs7893260	0.92[ASN][1000 genomes]
rs7893391	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897751	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
2	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
3	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
5	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
6	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
7	chr10:92658200-92676800	Weak transcription	NH-A	brain
8	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
9	chr10:92663400-92679600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:92668400-92678600	Enhancers	Dnd41	blood
11	chr10:92672400-92676600	Weak transcription	Hela-S3	cervix
12	chr10:92672400-92679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:92672600-92677200	Weak transcription	HepG2	liver
14	chr10:92672600-92677600	Strong transcription	A549	lung
15	chr10:92672800-92679800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
17	chr10:92674200-92676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:92674600-92680200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
19	chr10:92675000-92676200	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:92675000-92680400	Transcr. at gene 5' and 3'	HSMM	muscle
21	chr10:92675200-92676400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:92675200-92677800	Weak transcription	Osteobl	bone
23	chr10:92675400-92677400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:92675400-92680000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
25	chr10:92675600-92676600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:92675600-92676600	Genic enhancers	Left Ventricle	heart
27	chr10:92675600-92677200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:92675600-92680400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:92675800-92676200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:92675800-92676200	Genic enhancers	HSMMtube	muscle
31	chr10:92675800-92676600	Enhancers	Fetal Lung	lung
32	chr10:92675800-92677000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:92675800-92679200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:92675800-92679400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:92675800-92679800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:92676000-92678200	Transcr. at gene 5' and 3'	Fetal Heart	heart

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