Variant report

Variant	rs12772924
Chromosome Location	chr2:70851439-70851440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:70851341..70853905-chr2:70861887..70864146,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10509612	0.94[ASN][1000 genomes]
rs11186309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11591238	1.00[ASN][1000 genomes]
rs11594126	0.97[ASN][1000 genomes]
rs11594548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594649	0.95[ASN][1000 genomes]
rs11812708	0.86[EUR][1000 genomes]
rs11813096	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813240	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11814840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817364	0.86[EUR][1000 genomes]
rs11817665	0.90[EUR][1000 genomes]
rs11817810	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12411309	0.95[ASN][1000 genomes]
rs12412496	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413941	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12414389	0.99[ASN][1000 genomes]
rs12414726	0.99[ASN][1000 genomes]
rs12415970	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761105	0.95[ASN][1000 genomes]
rs12761148	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12764332	0.99[ASN][1000 genomes]
rs12764938	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12766523	0.95[ASN][1000 genomes]
rs12766851	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12774947	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12777881	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12778269	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779377	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12783703	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12784621	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12785051	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418214	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935346	0.95[ASN][1000 genomes]
rs1935348	1.00[ASN][1000 genomes]
rs1935349	1.00[ASN][1000 genomes]
rs1935350	1.00[ASN][1000 genomes]
rs1935351	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153779	0.98[ASN][1000 genomes]
rs2185706	0.98[ASN][1000 genomes]
rs2185707	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2420368	1.00[ASN][1000 genomes]
rs28842222	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34871116	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35449520	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35598406	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35731058	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35863839	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101610	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4144423	0.90[ASN][1000 genomes]
rs4262637	0.90[EUR][1000 genomes]
rs4272713	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4350278	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4350279	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4406742	0.99[ASN][1000 genomes]
rs4459202	0.99[ASN][1000 genomes]
rs4933195	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933199	0.95[ASN][1000 genomes]
rs4933200	0.92[ASN][1000 genomes]
rs4933606	0.90[EUR][1000 genomes]
rs4933607	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933608	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933613	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933620	0.89[ASN][1000 genomes]
rs4933621	0.88[ASN][1000 genomes]
rs56662980	0.87[EUR][1000 genomes]
rs56972023	0.85[EUR][1000 genomes]
rs57768581	0.87[EUR][1000 genomes]
rs57825126	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58460916	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58586220	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58868307	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59277098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59371013	0.85[EUR][1000 genomes]
rs60135579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60226639	0.90[EUR][1000 genomes]
rs60748043	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60873034	0.89[EUR][1000 genomes]
rs61218433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7072526	0.90[EUR][1000 genomes]
rs7074715	0.99[ASN][1000 genomes]
rs7075333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078682	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7079267	0.82[EUR][1000 genomes]
rs7079426	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084468	0.96[ASN][1000 genomes]
rs7086484	0.94[ASN][1000 genomes]
rs7089533	0.99[ASN][1000 genomes]
rs7090415	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7091039	0.90[EUR][1000 genomes]
rs7093602	1.00[ASN][1000 genomes]
rs7096934	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479059	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479062	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7893260	1.00[ASN][1000 genomes]
rs7893391	1.00[ASN][1000 genomes]
rs7897751	1.00[ASN][1000 genomes]
rs7907728	0.90[EUR][1000 genomes]
rs7912164	0.89[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:70847200-70852200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:70848200-70853400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:70848600-70853400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:70849000-70853600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:70851200-70851600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:70851400-70851600	Enhancers	HUES64 Cell Line	embryonic stem cell

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