Variant report

Variant	rs4933606
Chromosome Location	chr10:92531394-92531395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11186309	0.92[EUR][1000 genomes]
rs11594548	0.92[EUR][1000 genomes]
rs11812708	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813096	0.90[EUR][1000 genomes]
rs11813240	0.90[EUR][1000 genomes]
rs11814840	0.90[EUR][1000 genomes]
rs11817364	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11817665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817810	0.90[EUR][1000 genomes]
rs12412496	0.94[EUR][1000 genomes]
rs12413941	0.94[EUR][1000 genomes]
rs12415970	0.90[EUR][1000 genomes]
rs12764938	0.92[EUR][1000 genomes]
rs12766851	0.92[EUR][1000 genomes]
rs12772924	0.90[EUR][1000 genomes]
rs12774947	0.88[EUR][1000 genomes]
rs12777881	0.81[EUR][1000 genomes]
rs12778269	0.90[EUR][1000 genomes]
rs12779377	0.91[EUR][1000 genomes]
rs12779610	0.92[EUR][1000 genomes]
rs12783703	0.92[EUR][1000 genomes]
rs12784621	0.82[EUR][1000 genomes]
rs12785051	0.92[EUR][1000 genomes]
rs1418214	0.92[EUR][1000 genomes]
rs17099060	0.92[ASN][1000 genomes]
rs17099203	0.92[ASN][1000 genomes]
rs17099236	0.97[ASN][1000 genomes]
rs17100178	0.86[ASN][1000 genomes]
rs1935351	0.92[EUR][1000 genomes]
rs2185707	0.89[EUR][1000 genomes]
rs34871116	0.90[EUR][1000 genomes]
rs35449520	0.90[EUR][1000 genomes]
rs35598406	0.92[EUR][1000 genomes]
rs35731058	0.93[EUR][1000 genomes]
rs35863839	0.90[EUR][1000 genomes]
rs36101610	0.94[EUR][1000 genomes]
rs4262637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4272713	0.92[EUR][1000 genomes]
rs4350278	0.88[EUR][1000 genomes]
rs4350279	0.85[EUR][1000 genomes]
rs4933193	0.92[ASN][1000 genomes]
rs4933195	0.90[EUR][1000 genomes]
rs4933607	0.94[EUR][1000 genomes]
rs4933608	0.92[EUR][1000 genomes]
rs4933613	0.89[EUR][1000 genomes]
rs56662980	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56972023	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57768581	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57822829	0.86[ASN][1000 genomes]
rs57825126	0.85[EUR][1000 genomes]
rs58132737	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58460916	0.89[EUR][1000 genomes]
rs58586220	0.90[EUR][1000 genomes]
rs58868307	0.91[EUR][1000 genomes]
rs59277098	0.91[EUR][1000 genomes]
rs59371013	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60135579	0.92[EUR][1000 genomes]
rs60226639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60748043	0.88[EUR][1000 genomes]
rs60844040	1.00[ASN][1000 genomes]
rs60873034	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61218433	0.91[EUR][1000 genomes]
rs7072526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075333	0.92[EUR][1000 genomes]
rs7078682	0.86[EUR][1000 genomes]
rs7079426	0.90[EUR][1000 genomes]
rs7090415	0.94[EUR][1000 genomes]
rs7090941	0.92[EUR][1000 genomes]
rs7091039	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096934	0.89[EUR][1000 genomes]
rs71479059	0.85[EUR][1000 genomes]
rs7906966	0.93[ASN][1000 genomes]
rs7907728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913138	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1052753	chr10:92081093-92565617	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv467432	chr10:92082250-92559908	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv551879	chr10:92082250-92559908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv467433	chr10:92083015-92598458	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv551880	chr10:92083015-92598458	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv516743	chr10:92083015-92605119	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1049931	chr10:92083932-92605364	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv551882	chr10:92090785-92598823	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1047255	chr10:92095431-92548184	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv540744	chr10:92095431-92548184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1054504	chr10:92099335-92590723	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv533133	chr10:92363552-92594891	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1036058	chr10:92471568-92605364	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92529800-92531400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr10:92529800-92531400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:92530000-92535000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:92530200-92531600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:92530400-92531400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:92530400-92534800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:92530400-92535000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:92530600-92531600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:92530600-92531600	ZNF genes & repeats	Fetal Stomach	stomach
10	chr10:92530600-92535000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:92531000-92531600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:92531000-92535000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:92531200-92531600	Enhancers	Esophagus	oesophagus

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