Variant report

Variant	rs56972023
Chromosome Location	chr10:92490703-92490704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11186283	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11186284	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11186286	0.82[EUR][1000 genomes]
rs11186309	0.87[EUR][1000 genomes]
rs11594548	0.87[EUR][1000 genomes]
rs11812708	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11813096	0.85[EUR][1000 genomes]
rs11813240	0.85[EUR][1000 genomes]
rs11814840	0.85[EUR][1000 genomes]
rs11817364	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817665	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11817810	0.85[EUR][1000 genomes]
rs12259754	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12412496	0.89[EUR][1000 genomes]
rs12413941	0.88[EUR][1000 genomes]
rs12415970	0.85[EUR][1000 genomes]
rs12764938	0.87[EUR][1000 genomes]
rs12766851	0.87[EUR][1000 genomes]
rs12772924	0.85[EUR][1000 genomes]
rs12774947	0.83[EUR][1000 genomes]
rs12778269	0.87[EUR][1000 genomes]
rs12779377	0.86[EUR][1000 genomes]
rs12779610	0.87[EUR][1000 genomes]
rs12783703	0.87[EUR][1000 genomes]
rs12785051	0.87[EUR][1000 genomes]
rs1418214	0.87[EUR][1000 genomes]
rs17099060	0.95[ASN][1000 genomes]
rs17099203	0.95[ASN][1000 genomes]
rs17099236	1.00[ASN][1000 genomes]
rs17100178	0.83[ASN][1000 genomes]
rs17525184	0.81[EUR][1000 genomes]
rs1935351	0.87[EUR][1000 genomes]
rs2185707	0.84[EUR][1000 genomes]
rs34871116	0.85[EUR][1000 genomes]
rs35449520	0.85[EUR][1000 genomes]
rs35598406	0.87[EUR][1000 genomes]
rs35731058	0.87[EUR][1000 genomes]
rs35863839	0.84[EUR][1000 genomes]
rs36101610	0.88[EUR][1000 genomes]
rs4262637	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4272713	0.87[EUR][1000 genomes]
rs4350278	0.82[EUR][1000 genomes]
rs4350279	0.80[EUR][1000 genomes]
rs4933193	0.95[ASN][1000 genomes]
rs4933195	0.85[EUR][1000 genomes]
rs4933606	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933607	0.89[EUR][1000 genomes]
rs4933608	0.87[EUR][1000 genomes]
rs4933613	0.83[EUR][1000 genomes]
rs56662980	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57768581	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57822829	0.83[ASN][1000 genomes]
rs57825126	0.80[EUR][1000 genomes]
rs58132737	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58460916	0.83[EUR][1000 genomes]
rs58586220	0.85[EUR][1000 genomes]
rs58868307	0.86[EUR][1000 genomes]
rs59277098	0.86[EUR][1000 genomes]
rs59371013	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60135579	0.87[EUR][1000 genomes]
rs60226639	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60748043	0.83[EUR][1000 genomes]
rs60844040	0.97[ASN][1000 genomes]
rs60873034	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61218433	0.86[EUR][1000 genomes]
rs7071278	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7071656	0.82[EUR][1000 genomes]
rs7072526	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7072840	0.82[EUR][1000 genomes]
rs7075333	0.87[EUR][1000 genomes]
rs7078682	0.80[EUR][1000 genomes]
rs7079426	0.85[EUR][1000 genomes]
rs7090415	0.89[EUR][1000 genomes]
rs7090941	0.87[EUR][1000 genomes]
rs7091039	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7095540	0.81[EUR][1000 genomes]
rs7096934	0.84[EUR][1000 genomes]
rs74148818	0.81[EUR][1000 genomes]
rs74148819	0.81[EUR][1000 genomes]
rs7900519	0.81[EUR][1000 genomes]
rs7906966	0.96[ASN][1000 genomes]
rs7907728	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912164	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1052753	chr10:92081093-92565617	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv467432	chr10:92082250-92559908	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv551879	chr10:92082250-92559908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv467433	chr10:92083015-92598458	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv551880	chr10:92083015-92598458	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv516743	chr10:92083015-92605119	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1049931	chr10:92083932-92605364	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv551882	chr10:92090785-92598823	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1047255	chr10:92095431-92548184	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv540744	chr10:92095431-92548184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1054504	chr10:92099335-92590723	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv533133	chr10:92363552-92594891	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1036058	chr10:92471568-92605364	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92484400-92494600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:92485800-92492000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:92485800-92494000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:92486000-92493000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:92486200-92494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:92486200-92494400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:92486400-92492000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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