Variant report

Variant	rs12764628
Chromosome Location	chr10:27118560-27118561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12413383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12774231	0.92[EUR][1000 genomes]
rs12776877	0.88[EUR][1000 genomes]
rs12779919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12780703	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16927334	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17669895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17747961	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17748178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2094150	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182294	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182295	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35175791	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35531360	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5010875	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5025734	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68021348	0.85[EUR][1000 genomes]
rs7091364	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7092571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7092950	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7094825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7916104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7920164	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv11591	chr10:27117697-27135748	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
2	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:27095400-27129800	Weak transcription	NHEK	skin
6	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
7	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:27097200-27120000	Weak transcription	HepG2	liver
10	chr10:27099800-27128800	Weak transcription	K562	blood
11	chr10:27101800-27129000	Weak transcription	Stomach Mucosa	stomach
12	chr10:27104800-27119200	Weak transcription	Esophagus	oesophagus
13	chr10:27104800-27129200	Weak transcription	Colonic Mucosa	Colon
14	chr10:27105000-27122000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:27106600-27119000	Weak transcription	Thymus	Thymus
16	chr10:27106600-27122000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:27107000-27129000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:27107400-27129000	Weak transcription	Spleen	Spleen
19	chr10:27108000-27120600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:27109400-27132600	Weak transcription	HMEC	breast
21	chr10:27110000-27130400	Weak transcription	HUVEC	blood vessel
22	chr10:27111400-27125200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:27111600-27118800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:27111800-27118600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:27111800-27129000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:27111800-27129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
28	chr10:27112000-27118800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:27112000-27119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:27112000-27121000	Weak transcription	NHDF-Ad	bronchial
31	chr10:27112000-27122000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:27112000-27126000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:27112000-27128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:27112000-27130400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:27112200-27118600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:27112200-27118600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:27112200-27119200	Weak transcription	Fetal Thymus	thymus
38	chr10:27112200-27121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:27112200-27121600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:27112400-27129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:27112600-27118600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr10:27112600-27118800	Weak transcription	Dnd41	blood
43	chr10:27112800-27120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:27112800-27121600	Weak transcription	Left Ventricle	heart
45	chr10:27112800-27125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:27112800-27129000	Weak transcription	Primary B cells from cord blood	blood
47	chr10:27112800-27129000	Weak transcription	Brain Anterior Caudate	brain
48	chr10:27112800-27129000	Weak transcription	Small Intestine	intestine
49	chr10:27113400-27118800	Weak transcription	Primary T cells from cord blood	blood
50	chr10:27113600-27118800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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