Variant report

Variant	rs7091364
Chromosome Location	chr10:27071972-27071973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27070974..27073894-chr10:27148134..27150716,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11015265	0.89[AFR][1000 genomes]
rs12413383	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12416171	0.93[AFR][1000 genomes]
rs12764628	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12774231	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12776877	0.88[EUR][1000 genomes]
rs12779919	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12780703	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16927314	0.89[AFR][1000 genomes]
rs16927324	0.93[AFR][1000 genomes]
rs16927334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17669895	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17747961	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17748178	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2018904	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094150	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2182294	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2182295	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35175791	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531360	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802614	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5010875	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5025734	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482574	0.95[AFR][1000 genomes]
rs67940790	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68021348	0.82[EUR][1000 genomes]
rs7092571	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7092950	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094825	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7096584	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7916104	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920164	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv6132	chr10:27066081-27075522	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
2	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
3	chr10:27057800-27072000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:27058000-27072200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:27058000-27079200	Weak transcription	Dnd41	blood
6	chr10:27064600-27074200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:27066200-27074600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:27066400-27074000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:27066400-27074600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:27066400-27075200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:27066800-27073400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:27067200-27073000	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:27067600-27072200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:27068200-27072000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:27068400-27072000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:27068400-27079400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:27068600-27073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:27068600-27074200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:27069000-27072400	Weak transcription	HepG2	liver
20	chr10:27069000-27073000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:27069200-27078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:27069400-27073000	Enhancers	Small Intestine	intestine
23	chr10:27069400-27079600	Weak transcription	K562	blood
24	chr10:27069800-27075000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:27069800-27084600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:27070000-27074000	Enhancers	Brain Substantia Nigra	brain
27	chr10:27070200-27076600	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:27070600-27072800	Weak transcription	Fetal Thymus	thymus
29	chr10:27070600-27073000	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:27070600-27074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:27070600-27082800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:27070800-27072200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:27071000-27072000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:27071000-27072000	Enhancers	GM12878-XiMat	blood
36	chr10:27071000-27072200	Enhancers	Primary B cells from cord blood	blood
37	chr10:27071000-27072200	Enhancers	HMEC	breast
38	chr10:27071000-27072600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:27071000-27073200	Weak transcription	Right Atrium	heart
40	chr10:27071000-27073600	Weak transcription	Placenta	Placenta
41	chr10:27071000-27073800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:27071000-27075000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:27071000-27075000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:27071000-27080600	Weak transcription	Fetal Intestine Large	intestine
45	chr10:27071000-27080800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:27071000-27082000	Weak transcription	Fetal Brain Male	brain
47	chr10:27071000-27083800	Weak transcription	Fetal Intestine Small	intestine
48	chr10:27071000-27084600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:27071200-27072400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr10:27071200-27072400	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links