Variant report

Variant	rs68021348
Chromosome Location	chr10:27147808-27147809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27144252..27146067-chr10:27147473..27149312,2	K562	blood:
2	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
3	chr10:26985820..26988072-chr10:27146146..27148429,3	MCF-7	breast:
4	chr10:27147488..27149216-chr14:104802775..104805122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12764628	0.85[EUR][1000 genomes]
rs12776877	0.86[AFR][1000 genomes]
rs16927334	0.82[EUR][1000 genomes]
rs17669895	0.87[EUR][1000 genomes]
rs17747961	0.83[EUR][1000 genomes]
rs17748178	0.94[EUR][1000 genomes]
rs2018904	0.83[EUR][1000 genomes]
rs2094150	0.82[EUR][1000 genomes]
rs2182294	0.84[EUR][1000 genomes]
rs2182295	0.83[EUR][1000 genomes]
rs35175791	0.83[EUR][1000 genomes]
rs35531360	0.83[EUR][1000 genomes]
rs5010875	0.83[EUR][1000 genomes]
rs5025734	0.83[EUR][1000 genomes]
rs7091364	0.82[EUR][1000 genomes]
rs7092950	0.82[EUR][1000 genomes]
rs7916104	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
4	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27142600-27148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:27143600-27148000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr10:27143600-27148200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:27144600-27148200	Weak transcription	Small Intestine	intestine
9	chr10:27145400-27148000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:27146400-27148200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:27146400-27150400	Active TSS	GM12878-XiMat	blood
12	chr10:27146600-27148200	Enhancers	Fetal Intestine Small	intestine
13	chr10:27146600-27148200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:27146600-27148600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr10:27146600-27149000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr10:27146800-27148200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:27146800-27148200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:27146800-27148400	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr10:27146800-27148600	Flanking Active TSS	Dnd41	blood
20	chr10:27146800-27149000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:27147000-27148000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:27147000-27148200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr10:27147000-27148200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:27147000-27148200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:27147000-27148200	Flanking Active TSS	Osteobl	bone
26	chr10:27147000-27148400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr10:27147000-27148400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr10:27147000-27148400	Flanking Active TSS	NH-A	brain
29	chr10:27147000-27148600	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr10:27147000-27148800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr10:27147000-27149000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:27147000-27150400	Active TSS	Right Ventricle	heart
33	chr10:27147000-27150600	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr10:27147000-27150800	Active TSS	Thymus	Thymus
35	chr10:27147200-27148000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:27147200-27148000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr10:27147200-27148000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:27147200-27148000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:27147200-27148000	Flanking Active TSS	HepG2	liver
40	chr10:27147200-27148200	Enhancers	Fetal Brain Female	brain
41	chr10:27147200-27149000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr10:27147200-27150400	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr10:27147200-27150400	Active TSS	HSMMtube	muscle
44	chr10:27147200-27150400	Active TSS	NHLF	lung
45	chr10:27147400-27148200	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:27147400-27148200	Flanking Active TSS	HUVEC	blood vessel
47	chr10:27147400-27148400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr10:27147400-27148400	Weak transcription	Esophagus	oesophagus
49	chr10:27147400-27148400	Weak transcription	Left Ventricle	heart
50	chr10:27147400-27148400	Weak transcription	Lung	lung

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