Variant report

Variant	rs1276905
Chromosome Location	chr6:82408286-82408287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1144175	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1144176	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1145868	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1145869	0.94[EUR][1000 genomes]
rs1145872	0.95[EUR][1000 genomes]
rs1145873	0.94[EUR][1000 genomes]
rs1145874	0.95[EUR][1000 genomes]
rs1145875	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027683	chr6:82408186-82426855	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82406600-82408400	Enhancers	Hela-S3	cervix
2	chr6:82407400-82408600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:82407400-82410200	Weak transcription	Fetal Heart	heart
4	chr6:82407800-82410200	Weak transcription	HSMM	muscle
5	chr6:82407800-82411000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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