Variant report

Variant	rs12769076
Chromosome Location	chr10:97320445-97320446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97314309..97316972-chr10:97319111..97320746,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1254093	0.83[ASN][1000 genomes]
rs1270505	0.82[ASN][1000 genomes]
rs1272125	0.88[ASN][1000 genomes]
rs12767387	0.89[ASN][1000 genomes]
rs12768725	0.87[ASN][1000 genomes]
rs495998	0.84[ASN][1000 genomes]
rs498055	0.83[ASN][1000 genomes]
rs500470	0.90[ASN][1000 genomes]
rs526928	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs527043	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs530773	0.90[ASN][1000 genomes]
rs576080	0.83[ASN][1000 genomes]
rs7086071	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7086880	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7090870	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7918947	0.94[ASN][1000 genomes]
rs9630087	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97315200-97321600	Active TSS	Aorta	Aorta
2	chr10:97316800-97321600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:97317000-97321600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:97317200-97321600	Active TSS	Right Ventricle	heart
5	chr10:97317800-97321600	Active TSS	Colon Smooth Muscle	Colon
6	chr10:97318000-97321600	Active TSS	Brain Angular Gyrus	brain
7	chr10:97318200-97321600	Active TSS	Brain Hippocampus Middle	brain
8	chr10:97318200-97321600	Active TSS	HSMMtube	muscle
9	chr10:97318400-97321600	Active TSS	Brain Cingulate Gyrus	brain
10	chr10:97318600-97321600	Active TSS	Brain Anterior Caudate	brain
11	chr10:97318800-97321600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr10:97318800-97321600	Active TSS	Rectal Smooth Muscle	rectum
13	chr10:97319000-97320600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:97319000-97321400	Active TSS	Brain Substantia Nigra	brain
15	chr10:97319000-97321600	Active TSS	HSMM	muscle
16	chr10:97319200-97320600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr10:97319200-97320600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
18	chr10:97319200-97321600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:97319400-97321600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:97319400-97321600	Active TSS	Ovary	ovary
21	chr10:97319400-97321800	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr10:97319400-97321800	Active TSS	H9 Cell Line	embryonic stem cell
23	chr10:97319600-97320800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr10:97319600-97320800	Active TSS	Fetal Heart	heart
25	chr10:97319600-97321400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:97319600-97321400	Active TSS	Duodenum Mucosa	Duodenum
27	chr10:97319600-97321600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr10:97319600-97321600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97319600-97321600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:97319600-97321600	Active TSS	Gastric	stomach
31	chr10:97319600-97321600	Active TSS	Left Ventricle	heart
32	chr10:97319600-97321600	Active TSS	Lung	lung
33	chr10:97319600-97321600	Active TSS	Psoas Muscle	Psoas
34	chr10:97319600-97321800	Active TSS	Brain Germinal Matrix	brain
35	chr10:97319600-97321800	Active TSS	Fetal Brain Male	brain
36	chr10:97319600-97321800	Active TSS	Fetal Brain Female	brain
37	chr10:97319800-97321400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:97319800-97321600	Active TSS	Fetal Intestine Large	intestine
39	chr10:97319800-97321600	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr10:97319800-97321600	Active TSS	Right Atrium	heart
41	chr10:97320000-97320600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
42	chr10:97320000-97320600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:97320000-97320600	Flanking Active TSS	Liver	Liver
44	chr10:97320000-97320600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr10:97320000-97320600	Bivalent/Poised TSS	A549	lung
46	chr10:97320000-97320600	Flanking Active TSS	HMEC	breast
47	chr10:97320000-97320600	Flanking Bivalent TSS/Enh	Osteobl	bone
48	chr10:97320000-97320800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:97320000-97320800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:97320000-97320800	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links