Variant report

Variant	rs7090870
Chromosome Location	chr10:97324511-97324512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321491..97323159-chr10:97323965..97326308,2	K562	blood:
2	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1254093	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1270505	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1272125	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12767387	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12768725	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12769076	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs495998	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs498055	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs500470	0.94[ASN][1000 genomes]
rs526928	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs527043	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs530773	0.99[ASN][1000 genomes]
rs533383	0.81[ASN][1000 genomes]
rs557043	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs576080	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7086071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918947	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9630087	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97324600	Weak transcription	Fetal Lung	lung
2	chr10:97321600-97325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:97321600-97325600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
6	chr10:97321600-97328000	Weak transcription	Lung	lung
7	chr10:97321600-97329200	Enhancers	Placenta	Placenta
8	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
9	chr10:97321800-97324600	Weak transcription	Fetal Stomach	stomach
10	chr10:97321800-97325000	Weak transcription	Hela-S3	cervix
11	chr10:97321800-97325400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:97321800-97325600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:97321800-97325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:97322000-97324600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:97322200-97324600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:97322400-97325000	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97322600-97324600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:97323000-97324800	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:97323000-97328000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:97323400-97324600	Enhancers	HepG2	liver
27	chr10:97324400-97325400	Enhancers	Fetal Intestine Large	intestine

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