Variant report

Variant	rs12769821
Chromosome Location	chr10:49963068-49963069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11101447	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11101454	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11101458	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101461	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12775006	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12784705	0.98[EUR][1000 genomes]
rs17011160	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17698900	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2199846	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2889689	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34584605	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67702314	1.00[EUR][1000 genomes]
rs7087831	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7914884	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12769821	WDFY4	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49957600-49963400	Strong transcription	GM12878-XiMat	blood
2	chr10:49958600-49967800	Weak transcription	Lung	lung
3	chr10:49959000-49968000	Weak transcription	Spleen	Spleen
4	chr10:49959400-49966800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:49960200-49967000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:49960200-49968400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:49960800-49966000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:49960800-49967400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:49962200-49964000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:49962400-49963400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:49962400-49964000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:49962400-49980600	Strong transcription	Primary B cells from cord blood	blood
13	chr10:49962800-49964000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:49963000-49963200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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