Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr10:49956455-49956936	GM12878	blood:	n/a	chr10:49956790-49956801
2	NFIC	chr10:49956337-49957078	GM12878	blood:	n/a	n/a
3	MTA3	chr10:49956489-49956989	GM12878	blood:	n/a	n/a
4	PML	chr10:49956413-49957062	GM12878	blood:	n/a	n/a
5	NFYB	chr10:49956416-49956616	GM12878	blood:	n/a	n/a
6	MTA3	chr10:49956398-49957062	GM12878	blood:	n/a	n/a
7	IRF4	chr10:49956360-49957048	GM12878	blood:	n/a	n/a
8	ATF2	chr10:49956522-49957037	GM12878	blood:	n/a	n/a
9	MEF2C	chr10:49956519-49956918	GM12878	blood:	n/a	chr10:49956709-49956730 chr10:49956712-49956727
10	MEF2A	chr10:49956473-49956960	GM12878	blood:	n/a	chr10:49956709-49956730
11	FOXM1	chr10:49956465-49957057	GM12878	blood:	n/a	n/a
12	IKZF1	chr10:49956509-49957012	GM12878	blood:	n/a	n/a
13	BCL11A	chr10:49956460-49956914	GM12878	blood:	n/a	chr10:49956790-49956799
14	NFIC	chr10:49956297-49957004	GM12878	blood:	n/a	n/a
15	SPI1	chr10:49956375-49957160	GM12878	blood:	n/a	chr10:49956521-49956534 chr10:49956790-49956799
16	RUNX3	chr10:49956408-49956986	GM12878	blood:	n/a	n/a
17	NFATC1	chr10:49956511-49956927	GM12878	blood:	n/a	n/a
18	RUNX3	chr10:49956421-49957015	GM12878	blood:	n/a	n/a
19	ATF2	chr10:49956340-49957015	GM12878	blood:	n/a	n/a
20	BATF	chr10:49956447-49956970	GM12878	blood:	n/a	chr10:49956679-49956690
21	MEF2A	chr10:49956518-49956969	GM12878	blood:	n/a	chr10:49956709-49956730
22	WRNIP1	chr10:49956520-49956620	GM12878	blood:	n/a	n/a
23	IRF4	chr10:49956533-49957050	GM12878	blood:	n/a	n/a
24	BATF	chr10:49956497-49956867	GM12878	blood:	n/a	chr10:49956679-49956690

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49948156..49950641-chr10:49956258..49957956,2	K562	blood:

Variant related genes	Relation type
ENSG00000228754	TF binding region

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11101447	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11101454	0.94[EUR][1000 genomes]
rs11101458	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101461	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769821	1.00[EUR][1000 genomes]
rs12775006	1.00[EUR][1000 genomes]
rs12784705	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17698900	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2199846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2889689	1.00[EUR][1000 genomes]
rs34584605	1.00[EUR][1000 genomes]
rs7087831	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7914884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919695	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49931000-49956800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:49948600-49957200	Weak transcription	Esophagus	oesophagus
4	chr10:49952000-49960800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:49953400-49960200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:49954200-49957400	Weak transcription	Lung	lung
7	chr10:49954200-49957600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:49955000-49958000	Strong transcription	Primary hematopoietic stem cells	blood
9	chr10:49955400-49957600	Genic enhancers	GM12878-XiMat	blood
10	chr10:49955800-49957000	Genic enhancers	Primary B cells from cord blood	blood
11	chr10:49955800-49957000	Genic enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:49955800-49957200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:49955800-49957200	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr10:49956200-49957800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49956200-49958600	Enhancers	Adipose Nuclei	Adipose
16	chr10:49956400-49957400	Enhancers	Spleen	Spleen

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