Variant report

Variant	rs12771103
Chromosome Location	chr10:58582279-58582280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11812540	0.86[EUR][1000 genomes]
rs12764475	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12765726	0.86[EUR][1000 genomes]
rs12771829	0.86[EUR][1000 genomes]
rs12772357	0.82[EUR][1000 genomes]
rs12775731	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12779980	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16909816	1.00[ASN][1000 genomes]
rs16909828	1.00[ASN][1000 genomes]
rs34702142	0.86[EUR][1000 genomes]
rs35104970	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4540771	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66615433	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68179458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7074510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74140704	1.00[ASN][1000 genomes]
rs74141003	1.00[ASN][1000 genomes]
rs7900880	1.00[ASN][1000 genomes]
rs7920746	1.00[ASN][1000 genomes]
rs993745	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1049948	chr10:58542054-58594031	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv540651	chr10:58542054-58594031	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895509	chr10:58543768-58593295	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv551099	chr10:58557953-58618079	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2757390	chr10:58567723-58644512	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv975074	chr10:58571239-58609282	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3693060	chr10:58577802-58602006	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58580800-58583600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:58582000-58582400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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