Variant report

Variant	rs12764475
Chromosome Location	chr10:58641535-58641536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11812540	0.81[EUR][1000 genomes]
rs12765726	0.81[EUR][1000 genomes]
rs12771103	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12771829	0.81[EUR][1000 genomes]
rs12772357	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12775731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12779980	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34702142	0.81[EUR][1000 genomes]
rs35104970	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4540771	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66615433	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68179458	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7074510	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72796025	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs993745	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757390	chr10:58567723-58644512	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv895510	chr10:58602006-58672533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv947641	chr10:58620064-58685420	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv895511	chr10:58640650-58789387	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58640800-58642000	Enhancers	Fetal Lung	lung
2	chr10:58641000-58641600	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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