Variant report

Variant	rs993745
Chromosome Location	chr10:58628026-58628027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11812540	0.84[EUR][1000 genomes]
rs12764475	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12765726	0.84[EUR][1000 genomes]
rs12771103	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12771829	0.84[EUR][1000 genomes]
rs12772357	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12775731	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12779980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34702142	0.84[EUR][1000 genomes]
rs35104970	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4540771	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66615433	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68179458	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7074510	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72796025	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551064	chr10:58457011-58702440	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2758223	chr10:58490630-58689953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2759758	chr10:58490630-58689953	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2757390	chr10:58567723-58644512	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv551100	chr10:58602006-58636572	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895510	chr10:58602006-58672533	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv947641	chr10:58620064-58685420	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58618600-58636000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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