Variant report

Variant	rs12777225
Chromosome Location	chr10:18757239-18757240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18756743..18758287-chr10:18759029..18761253,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1113372	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11592092	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11592112	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11595529	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11596252	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11598027	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11599318	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12766343	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12767311	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1409202	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1409203	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1409204	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2148182	0.87[ASN][1000 genomes]
rs2182345	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34372664	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35482639	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs36043776	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3905378	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4424572	0.89[ASN][1000 genomes]
rs4748471	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7077250	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7097430	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71497246	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71497247	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs71497248	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71497249	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71497250	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7893853	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv12968	chr10:18747626-18761494	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760102	chr10:18749345-18762948	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv517404	chr10:18754495-18760635	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3693048	chr10:18755609-18760635	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
4	chr10:18744400-18761800	Weak transcription	Ovary	ovary
5	chr10:18745400-18763200	Weak transcription	Right Ventricle	heart
6	chr10:18745800-18761600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:18749000-18759000	Enhancers	Fetal Heart	heart
8	chr10:18751000-18760800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:18751000-18761400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
11	chr10:18753600-18761800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18756000-18759600	Weak transcription	Left Ventricle	heart

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