Variant report

Variant	rs71497246
Chromosome Location	chr10:18763194-18763195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1113372	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592092	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11592112	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11595529	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596252	0.83[EUR][1000 genomes]
rs11598027	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11599318	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766343	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767311	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777225	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1409202	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409203	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409204	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148182	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2182345	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34372664	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35255141	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35482639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36043776	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3905378	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424572	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748471	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077250	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096526	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7097430	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71497247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71497248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71497249	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71497250	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893853	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
3	chr10:18745400-18763200	Weak transcription	Right Ventricle	heart
4	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
5	chr10:18760000-18765000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:18760800-18763200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:18761600-18763200	Weak transcription	Left Ventricle	heart
8	chr10:18761600-18763400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:18761600-18764800	Weak transcription	Dnd41	blood
10	chr10:18761800-18766800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:18762000-18763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:18762000-18764000	Enhancers	Brain Germinal Matrix	brain
13	chr10:18762200-18763200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:18762200-18769600	Enhancers	Fetal Heart	heart
15	chr10:18762400-18764000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:18762600-18763400	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:18762600-18763600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:18762600-18763600	Enhancers	Brain Angular Gyrus	brain
19	chr10:18762800-18763200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:18762800-18763200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:18762800-18763400	Enhancers	Ovary	ovary
22	chr10:18762800-18763400	Enhancers	NHLF	lung
23	chr10:18762800-18763600	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:18762800-18763800	Enhancers	Brain Anterior Caudate	brain
25	chr10:18763000-18763200	Enhancers	Aorta	Aorta
26	chr10:18763000-18763400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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