Variant report

Variant	rs2148182
Chromosome Location	chr10:18767532-18767533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18751028..18753612-chr10:18765878..18768342,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1113372	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11592092	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11592112	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11595529	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11598027	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11599318	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12766343	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12767311	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12777225	0.87[ASN][1000 genomes]
rs1409202	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1409203	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1409204	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2182345	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28437427	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34372664	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35255141	0.90[ASN][1000 genomes]
rs35482639	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs36043776	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3905378	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4424572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4748471	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7077250	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7097430	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71497246	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs71497247	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs71497248	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs71497249	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs71497250	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7893853	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
3	chr10:18762200-18769600	Enhancers	Fetal Heart	heart
4	chr10:18763600-18778400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18764800-18767800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:18765400-18767600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:18765800-18771400	Weak transcription	Left Ventricle	heart
8	chr10:18766800-18771800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:18767200-18767800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:18767400-18767800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:18767400-18767800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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